Publications:

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Establishment and characterization of a new mantle cell lymphoma cell line with a NOTCH2 mutation, Arbo.

Ejhaem

Safa, Firas F; Rasmussen, Terri T; Lobelle-Rich, Patricia P; Collier, Stephanie S; Milligan, Nicholas N; Schmeig, John J; Schmid, Janet J; Wiewiorowski, Carol C; Totaro, Denise D; Brown, Theresa C TC; Satyavarapu, Ishwarya I; Badoo, Melody M; Ungerleider, Nathan N; Flemington, Erik K EK; Safah, Hana H; Saba, Nakhle S NS

Publication Date: 2022-11

Variant appearance in text: rs3132468

PubMed Link: 36467812

Variant Present in the following documents:

• JHA2-3-1326-s001.xlsx, sheet 1

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New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study.

Journal Of Cancer

Chen, Haimiao H; Wang, Ting T; Huang, Shuiping S; Zeng, Ping P

Publication Date: 2021

Variant appearance in text: rs3132468

PubMed Link: 33403041

Variant Present in the following documents:

• Main text

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Host genetics and infectious disease: new tools, insights and translational opportunities.

Nature Reviews. Genetics

Kwok, Andrew J AJ; Mentzer, Alex A; Knight, Julian C JC

Publication Date: 2021-03

Variant appearance in text: rs3132468

PubMed Link: 33277640

Variant Present in the following documents:

• Main text
• 41576_2020_Article_297.pdf

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Complement protein levels and MBL2 polymorphisms are associated with dengue and disease severity.

Scientific Reports

Giang, Ngo Truong NT; van Tong, Hoang H; Quyet, Do D; Hoan, Nghiem Xuan NX; Nghia, Trinh Huu TH; Nam, Nguyen Minh NM; Hung, Hoang Vu HV; Anh, Do Tuan DT; Van Mao, Can C; Son, Ho Anh HA; Meyer, Christian G CG; Velavan, Thirumalaisamy P TP; Toan, Nguyen Linh NL

Publication Date: 2020-09-10

Variant appearance in text: rs3132468

PubMed Link: 32913345

Variant Present in the following documents:

• Main text
• 41598_2020_Article_71947.pdf

View BVdb publication page

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Major Histocompatibility Complex Class I Chain-Related A and B (MICA and MICB) Gene, Allele, and Haplotype Associations With Dengue Infections in Ethnic Thais.

The Journal Of Infectious Diseases

Luangtrakool, Panpimon P; Vejbaesya, Sasijit S; Luangtrakool, Komon K; Ngamhawornwong, Somporn S; Apisawes, Kusuma K; Kalayanarooj, Siripen S; Macareo, Louis R LR; Fernandez, Stefan S; Jarman, Richard G RG; Collins, Robert W M RWM; Cox, Steven T ST; Srikiatkhachorn, Anon A; Rothman, Alan L AL; Stephens, Henry A F HAF

Publication Date: 2020-08-04

Variant appearance in text: rs3132468

PubMed Link: 32737971

Variant Present in the following documents:

• Main text

View BVdb publication page

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Highlights on the Application of Genomics and Bioinformatics in the Fight Against Infectious Diseases: Challenges and Opportunities in Africa.

Frontiers In Genetics

Bah, Saikou Y SY; Morang'a, Collins Misita CM; Kengne-Ouafo, Jonas A JA; Amenga-Etego, Lucas L; Awandare, Gordon A GA

Publication Date: 2018

Variant appearance in text: rs3132468

PubMed Link: 30538723

Variant Present in the following documents:

• Main text
• fgene-09-00575.pdf

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Fine-mapping of HLA class I and class II genes identified two independent novel variants associated with nasopharyngeal carcinoma susceptibility.

Cancer Medicine

Wang, Tong-Min TM; Zhou, Ting T; He, Yong-Qiao YQ; Xue, Wen-Qiong WQ; Zhang, Jiang-Bo JB; Zheng, Xiao-Hui XH; Li, Xi-Zhao XZ; Zhang, Shao-Dan SD; Zeng, Yi-Xin YX; Jia, Wei-Hua WH

Publication Date: 2018-12

Variant appearance in text: rs3132468

PubMed Link: 30378292

Variant Present in the following documents:

• CAM4-7-6308-s006.xlsx, sheet 1

View BVdb publication page

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The Biological Influence and Clinical Relevance of Polymorphism Within the NKG2D Ligands.

Frontiers In Immunology

Zuo, Jianmin J; Mohammed, Fiyaz F; Moss, Paul P

Publication Date: 2018

Variant appearance in text: rs3132468

PubMed Link: 30166984

Variant Present in the following documents:

• Main text
• fimmu-09-01820.pdf

View BVdb publication page

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Identification of genetic variants associated with dengue or West Nile virus disease: a systematic review and meta-analysis.

Bmc Infectious Diseases

Cahill, Megan E ME; Conley, Samantha S; DeWan, Andrew T AT; Montgomery, Ruth R RR

Publication Date: 2018-06-22

Variant appearance in text: rs3132468

PubMed Link: 29929468

Variant Present in the following documents:

• Main text
• 12879_2018_Article_3186.pdf

View BVdb publication page

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Joint ancestry and association test indicate two distinct pathogenic pathways involved in classical dengue fever and dengue shock syndrome.

Plos Neglected Tropical Diseases

Oliveira, Marisa M; Lert-Itthiporn, Worachart W; Cavadas, Bruno B; Fernandes, Verónica V; Chuansumrit, Ampaiwan A; Anunciação, Orlando O; Casademont, Isabelle I; Koeth, Fanny F; Penova, Marina M; Tangnararatchakit, Kanchana K; Khor, Chiea Chuen CC; Paul, Richard R; Malasit, Prida P; Matsuda, Fumihiko F; Simon-Lorière, Etienne E; Suriyaphol, Prapat P; Pereira, Luisa L; Sakuntabhai, Anavaj A

Publication Date: 2018-02

Variant appearance in text: rs3132468

PubMed Link: 29447178

Variant Present in the following documents:

• Main text
• pntd.0006202.pdf

View BVdb publication page

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Genetic variants of MICB and PLCE1 and associations with the laboratory features of dengue.

Bmc Infectious Diseases

Whitehorn, James J; Kien, Duong Thi Hue DTH; Quyen, Nguyen Than Ha NTH; Wills, Bridget B; Van Vinh Chau, Nguyen N; Tam, Dong Thi Hoai DTH; Tuan, Nguyen Minh NM; Jaenisch, Thomas T; Hibberd, Martin M; Khor, Chiea Chuen CC; Simmons, Cameron P CP

Publication Date: 2017-06-09

Variant appearance in text: rs3132468

PubMed Link: 28599625

Variant Present in the following documents:

• Main text

View BVdb publication page

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The MHC locus and genetic susceptibility to autoimmune and infectious diseases.

Genome Biology

Matzaraki, Vasiliki V; Kumar, Vinod V; Wijmenga, Cisca C; Zhernakova, Alexandra A

Publication Date: 2017-04-27

Variant appearance in text: rs3132468

PubMed Link: 28449694

Variant Present in the following documents:

• Main text
• 13059_2017_Article_1207.pdf

View BVdb publication page

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Alternate-locus aware variant calling in whole genome sequencing.

Genome Medicine

Jäger, Marten M; Schubach, Max M; Zemojtel, Tomasz T; Reinert, Knut K; Church, Deanna M DM; Robinson, Peter N PN

Publication Date: 2016-12-13

Variant appearance in text: rs3132468

PubMed Link: 27964746

Variant Present in the following documents:

• 13073_2016_383_MOESM1_ESM.pdf

View BVdb publication page

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Inter-individual variability and genetic influences on cytokine responses to bacteria and fungi.

Nature Medicine

Li, Yang Y; Oosting, Marije M; Deelen, Patrick P; Ricaño-Ponce, Isis I; Smeekens, Sanne S; Jaeger, Martin M; Matzaraki, Vasiliki V; Swertz, Morris A MA; Xavier, Ramnik J RJ; Franke, Lude L; Wijmenga, Cisca C; Joosten, Leo A B LA; Kumar, Vinod V; Netea, Mihai G MG

Publication Date: 2016-08

Variant appearance in text: rs3132468

PubMed Link: 27376574

Variant Present in the following documents:

• Main text

View BVdb publication page

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In silico transcriptional regulation and functional analysis of dengue shock syndrome associated SNPs in PLCE1 and MICB genes.

Functional & Integrative Genomics

Taqi, Malik Mumtaz MM; Waseem, Durdana D; Ismatullah, Humaira H; Haider, Syed Aleem SA; Faisal, Muhammad M

Publication Date: 2016-05

Variant appearance in text: rs3132468

PubMed Link: 27038471

Variant Present in the following documents:

• Main text
• 10142_2016_Article_489.pdf

View BVdb publication page

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Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci†.

Human Molecular Genetics

Kirsten, Holger H; Al-Hasani, Hoor H; Holdt, Lesca L; Gross, Arnd A; Beutner, Frank F; Krohn, Knut K; Horn, Katrin K; Ahnert, Peter P; Burkhardt, Ralph R; Reiche, Kristin K; Hackermüller, Jörg J; Löffler, Markus M; Teupser, Daniel D; Thiery, Joachim J; Scholz, Markus M

Publication Date: 2015-08-15

Variant appearance in text: rs3132468

PubMed Link: 26019233

Variant Present in the following documents:

• Main text

View BVdb publication page

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Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis.

Bmc Genetics

Grange, Laura L; Bureau, Jean-François JF; Nikolayeva, Iryna I; Paul, Richard R; Van Steen, Kristel K; Schwikowski, Benno B; Sakuntabhai, Anavaj A

Publication Date: 2015-02-06

Variant appearance in text: rs3132468

PubMed Link: 25655172

Variant Present in the following documents:

• Main text
• 12863_2015_Article_174.pdf

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A replication study confirms the association of GWAS-identified SNPs at MICB and PLCE1 in Thai patients with dengue shock syndrome.

Bmc Medical Genetics

Dang, Tran Ngoc TN; Naka, Izumi I; Sa-Ngasang, Areerat A; Anantapreecha, Surapee S; Chanama, Sumalee S; Wichukchinda, Nuanjun N; Sawanpanyalert, Pathom P; Patarapotikul, Jintana J; Tsuchiya, Naoyuki N; Ohashi, Jun J

Publication Date: 2014-05-17

Variant appearance in text: rs3132468

PubMed Link: 24884822

Variant Present in the following documents:

• Main text

View BVdb publication page

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Circulating levels of soluble MICB in infants with symptomatic primary dengue virus infections.

Plos One

Libraty, Daniel H DH; Zhang, Lei L; Obcena, AnaMae A; Brion, Job D JD; Capeding, Rosario Z RZ

Publication Date: 2014

Variant appearance in text: rs3132468

PubMed Link: 24869966

Variant Present in the following documents:

• Main text

View BVdb publication page

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NK Cells during Dengue Disease and Their Recognition of Dengue Virus-Infected cells.

Frontiers In Immunology

Beltrán, Davis D; López-Vergès, Sandra S

Publication Date: 2014

Variant appearance in text: rs3132468

PubMed Link: 24829565

Variant Present in the following documents:

• Main text

View BVdb publication page

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Host genetics and immune control of HIV-1 infection: fine mapping for the extended human MHC region in an African cohort.

Genes And Immunity

Prentice, H A HA; Pajewski, N M NM; He, D D; Zhang, K K; Brown, E E EE; Kilembe, W W; Allen, S S; Hunter, E E; Kaslow, R A RA; Tang, J J

Publication Date: 2014

Variant appearance in text: rs3132468

PubMed Link: 24784026

Variant Present in the following documents:

• NIHMS580846-supplement-1.xlsx, sheet 2
• NIHMS580846-supplement-1.xlsx, sheet 3

View BVdb publication page

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JC polyomavirus infection is strongly controlled by human leucocyte antigen class II variants.

Plos Pathogens

Sundqvist, Emilie E; Buck, Dorothea D; Warnke, Clemens C; Albrecht, Eva E; Gieger, Christian C; Khademi, Mohsen M; Lima Bomfim, Izaura I; Fogdell-Hahn, Anna A; Link, Jenny J; Alfredsson, Lars L; Søndergaard, Helle Bach HB; Hillert, Jan J; , ; Oturai, Annette B AB; Hemmer, Bernhard B; Hemme, Bernhard B; Kockum, Ingrid I; Olsson, Tomas T

Publication Date: 2014-04

Variant appearance in text: rs3132468

PubMed Link: 24763718

Variant Present in the following documents:

• Main text
• ppat.1004084.pdf

View BVdb publication page

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Host genomics in infectious diseases.

Infection & Chemotherapy

Loeb, Mark M

Publication Date: 2013-09

Variant appearance in text: rs3132468

PubMed Link: 24396626

Variant Present in the following documents:

• Main text
• ic-45-253.pdf

View BVdb publication page

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Genetic variants of MICB and PLCE1 and associations with non-severe dengue.

Plos One

Whitehorn, James J; Chau, Tran Nguyen Bich TN; Nguyet, Nguyen Minh NM; Kien, Duong Thi Hue DT; Quyen, Nguyen Than Ha NT; Trung, Dinh The DT; Pang, Junxiong J; Wills, Bridget B; Van Vinh Chau, Nguyen N; Farrar, Jeremy J; Hibberd, Martin L ML; Khor, Chiea Chuen CC; Simmons, Cameron P CP

Publication Date: 2013

Variant appearance in text: rs3132468

PubMed Link: 23536857

Variant Present in the following documents:

• Main text
• pone.0059067.pdf

View BVdb publication page

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SHAVE: shrinkage estimator measured for multiple visits increases power in GWAS of quantitative traits.

European Journal Of Human Genetics : Ejhg

Meirelles, Osorio D OD; Ding, Jun J; Tanaka, Toshiko T; Sanna, Serena S; Yang, Hsih-Te HT; Dudekula, Dawood B DB; Cucca, Francesco F; Ferrucci, Luigi L; Abecasis, Goncalo G; Schlessinger, David D

Publication Date: 2013-06

Variant appearance in text: rs3132468

PubMed Link: 23092954

Variant Present in the following documents:

• Main text

View BVdb publication page

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Identification of autoimmune gene signatures in autism.

Translational Psychiatry

Jung, J-Y JY; Kohane, I S IS; Wall, D P DP

Publication Date: 2011-12-13

Variant appearance in text: rs3132468

PubMed Link: 22832355

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.

Nature Genetics

Khor, Chiea Chuen CC; Chau, Tran Nguyen Bich TN; Pang, Junxiong J; Davila, Sonia S; Long, Hoang Truong HT; Ong, Rick T H RT; Dunstan, Sarah J SJ; Wills, Bridget B; Farrar, Jeremy J; Van Tram, Ta T; Gan, Tran Thi TT; Binh, Nguyen Thi Nguyet NT; Tri, Le Trung le T; Lien, Le Bich le B; Tuan, Nguyen Minh NM; Tham, Nguyen Thi Hong NT; Lanh, Mai Ngoc MN; Nguyet, Nguyen Minh NM; Hieu, Nguyen Trong NT; Van N Vinh Chau, Nguyen N; Thuy, Tran Thi TT; Tan, Dennis E K DE; Sakuntabhai, Anavaj A; Teo, Yik-Ying YY; Hibberd, Martin L ML; Simmons, Cameron P CP

Publication Date: 2011-10-16

Variant appearance in text: rs3132468

PubMed Link: 22001756

Variant Present in the following documents:

• Main text
• ukmss-37099.pdf

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A novel statistic for genome-wide interaction analysis.

Plos Genetics

Wu, Xuesen X; Dong, Hua H; Luo, Li L; Zhu, Yun Y; Peng, Gang G; Reveille, John D JD; Xiong, Momiao M

Publication Date: 2010-09-23

Variant appearance in text: rs3132468

PubMed Link: 20885795

Variant Present in the following documents:

• Main text
• pgen.1001131.pdf

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