Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Proteomic genotyping of SNP of Complement Factor H (CFH) Y402H and I62V using multiple reaction monitoring (MRM) assays.
Scientific Reports
Kim, Kyoung Lae KL; Kim, Hyerim H; Lee, Youngju Y; Lee, Cheolju C; Joo, Kwangsic K; Park, Sang Jun SJ; Park, Kyu Hyung KH; Park, Seong-Jun SJ; Woo, Se Joon SJ
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Bacillus Calmette-Guérin Treatment Changes the Tumor Microenvironment of Non-Muscle-Invasive Bladder Cancer.
Frontiers In Oncology
Su, Fei F; Liu, Ming M; Zhang, Wei W; Tang, Min M; Zhang, Jinsong J; Li, Hexin H; Zou, Lihui L; Zhang, Rui R; Liu, Yudong Y; Li, Lin L; Ma, Jie J; Zhang, Yaqun Y; Chen, Meng M; Xiao, Fei F
Genomic atlas of the proteome from brain, CSF and plasma prioritizes proteins implicated in neurological disorders.
Nature Neuroscience
Yang, Chengran C; Farias, Fabiana H G FHG; Ibanez, Laura L; Suhy, Adam A; Sadler, Brooke B; Fernandez, Maria Victoria MV; Wang, Fengxian F; Bradley, Joseph L JL; Eiffert, Brett B; Bahena, Jorge A JA; Budde, John P JP; Li, Zeran Z; Dube, Umber U; Sung, Yun Ju YJ; Mihindukulasuriya, Kathie A KA; Morris, John C JC; Fagan, Anne M AM; Perrin, Richard J RJ; Benitez, Bruno A BA; Rhinn, Herve H; Harari, Oscar O; Cruchaga, Carlos C
Genomic atlas of the proteome from brain, CSF and plasma prioritizes proteins implicated in neurological disorders.
Nature Neuroscience
Yang, Chengran C; Farias, Fabiana H G FHG; Ibanez, Laura L; Suhy, Adam A; Sadler, Brooke B; Fernandez, Maria Victoria MV; Wang, Fengxian F; Bradley, Joseph L JL; Eiffert, Brett B; Bahena, Jorge A JA; Budde, John P JP; Li, Zeran Z; Dube, Umber U; Sung, Yun Ju YJ; Mihindukulasuriya, Kathie A KA; Morris, John C JC; Fagan, Anne M AM; Perrin, Richard J RJ; Benitez, Bruno A BA; Rhinn, Herve H; Harari, Oscar O; Cruchaga, Carlos C
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Publication Date: 2020-02
Variant appearance in text: SKIV2L: 452A>G; Gln151Arg
Gene-set meta-analysis of lung cancer identifies pathway related to systemic lupus erythematosus.
Plos One
Rosenberger, Albert A; Sohns, Melanie M; Friedrichs, Stefanie S; Hung, Rayjean J RJ; Fehringer, Gord G; McLaughlin, John J; Amos, Christopher I CI; Brennan, Paul P; Risch, Angela A; Brüske, Irene I; Caporaso, Neil E NE; Landi, Maria Teresa MT; Christiani, David C DC; Wei, Yongyue Y; Bickeböller, Heike H
Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.
Arthritis & Rheumatology (Hoboken, N.J.)
Merkel, Peter A PA; Xie, Gang G; Monach, Paul A PA; Ji, Xuemei X; Ciavatta, Dominic J DJ; Byun, Jinyoung J; Pinder, Benjamin D BD; Zhao, Ai A; Zhang, Jinyi J; Tadesse, Yohannes Y; Qian, David D; Weirauch, Matthew M; Nair, Rajan R; Tsoi, Alex A; Pagnoux, Christian C; Carette, Simon S; Chung, Sharon S; Cuthbertson, David D; Davis, John C JC; Dellaripa, Paul F PF; Forbess, Lindsy L; Gewurz-Singer, Ora O; Hoffman, Gary S GS; Khalidi, Nader N; Koening, Curry C; Langford, Carol A CA; Mahr, Alfred D AD; McAlear, Carol C; Moreland, Larry L; Seo, E Philip EP; Specks, Ulrich U; Spiera, Robert F RF; Sreih, Antoine A; St Clair, E William EW; Stone, John H JH; Ytterberg, Steven R SR; Elder, James T JT; Qu, Jia J; Ochi, Toshiki T; Hirano, Naoto N; Edberg, Jeffrey C JC; Falk, Ronald J RJ; Amos, Christopher I CI; Siminovitch, Katherine A KA; ,
Three-dimensional modelling identifies novel genetic dependencies associated with breast cancer progression in the isogenic MCF10 model.
The Journal Of Pathology
Maguire, Sarah L SL; Peck, Barrie B; Wai, Patty T PT; Campbell, James J; Barker, Holly H; Gulati, Aditi A; Daley, Frances F; Vyse, Simon S; Huang, Paul P; Lord, Christopher J CJ; Farnie, Gillian G; Brennan, Keith K; Natrajan, Rachael R
Publication Date: 2016-11
Variant appearance in text: SKIV2L: Q151R; rs438999
Clinical and genetic factors associated with progression of geographic atrophy lesions in age-related macular degeneration.
Plos One
Grassmann, Felix F; Fleckenstein, Monika M; Chew, Emily Y EY; Strunz, Tobias T; Schmitz-Valckenberg, Steffen S; Göbel, Arno P AP; Klein, Michael L ML; Ratnapriya, Rinki R; Swaroop, Anand A; Holz, Frank G FG; Weber, Bernhard H F BH
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: SKIV2L: Q151R; rs438999
Identification of a rare coding variant in complement 3 associated with age-related macular degeneration.
Nature Genetics
Zhan, Xiaowei X; Larson, David E DE; Wang, Chaolong C; Koboldt, Daniel C DC; Sergeev, Yuri V YV; Fulton, Robert S RS; Fulton, Lucinda L LL; Fronick, Catrina C CC; Branham, Kari E KE; Bragg-Gresham, Jennifer J; Jun, Goo G; Hu, Youna Y; Kang, Hyun Min HM; Liu, Dajiang D; Othman, Mohammad M; Brooks, Matthew M; Ratnapriya, Rinki R; Boleda, Alexis A; Grassmann, Felix F; von Strachwitz, Claudia C; Olson, Lana M LM; Buitendijk, Gabriëlle H S GH; Hofman, Albert A; van Duijn, Cornelia M CM; Cipriani, Valentina V; Moore, Anthony T AT; Shahid, Humma H; Jiang, Yingda Y; Conley, Yvette P YP; Morgan, Denise J DJ; Kim, Ivana K IK; Johnson, Matthew P MP; Cantsilieris, Stuart S; Richardson, Andrea J AJ; Guymer, Robyn H RH; Luo, Hongrong H; Ouyang, Hong H; Licht, Christoph C; Pluthero, Fred G FG; Zhang, Mindy M MM; Zhang, Kang K; Baird, Paul N PN; Blangero, John J; Klein, Michael L ML; Farrer, Lindsay A LA; DeAngelis, Margaret M MM; Weeks, Daniel E DE; Gorin, Michael B MB; Yates, John R W JR; Klaver, Caroline C W CC; Pericak-Vance, Margaret A MA; Haines, Jonathan L JL; Weber, Bernhard H F BH; Wilson, Richard K RK; Heckenlively, John R JR; Chew, Emily Y EY; Stambolian, Dwight D; Mardis, Elaine R ER; Swaroop, Anand A; Abecasis, Goncalo R GR
Publication Date: 2013-11
Variant appearance in text: SKIV2L: Q151R; rs438999
Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.
Human Molecular Genetics
Cipriani, Valentina V; Leung, Hin-Tak HT; Plagnol, Vincent V; Bunce, Catey C; Khan, Jane C JC; Shahid, Humma H; Moore, Anthony T AT; Harding, Simon P SP; Bishop, Paul N PN; Hayward, Caroline C; Campbell, Susan S; Armbrecht, Ana Maria AM; Dhillon, Baljean B; Deary, Ian J IJ; Campbell, Harry H; Dunlop, Malcolm M; Dominiczak, Anna F AF; Mann, Samantha S SS; Jenkins, Sharon A SA; Webster, Andrew R AR; Bird, Alan C AC; Lathrop, Mark M; Zelenika, Diana D; Souied, Eric H EH; Sahel, José-Alain JA; Léveillard, Thierry T; , ; Cree, Angela J AJ; Gibson, Jane J; Ennis, Sarah S; Lotery, Andrew J AJ; Wright, Alan F AF; Clayton, David G DG; Yates, John R W JR
Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.
Genes And Immunity
Kopplin, L J LJ; Igo, R P RP; Wang, Y Y; Sivakumaran, T A TA; Hagstrom, S A SA; Peachey, N S NS; Francis, P J PJ; Klein, M L ML; SanGiovanni, J P JP; Chew, E Y EY; Pauer, G J T GJ; Sturgill, G M GM; Joshi, T T; Tian, L L; Xi, Q Q; Henning, A K AK; Lee, K E KE; Klein, R R; Klein, B E K BE; Iyengar, S K SK