Publications:

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Integrative proteogenomic characterization of early esophageal cancer.

Nature Communications

Li, Lingling L; Jiang, Dongxian D; Zhang, Qiao Q; Liu, Hui H; Xu, Fujiang F; Guo, Chunmei C; Qin, Zhaoyu Z; Wang, Haixing H; Feng, Jinwen J; Liu, Yang Y; Chen, Weijie W; Zhang, Xue X; Bai, Lin L; Tian, Sha S; Tan, Subei S; Xu, Chen C; Song, Qi Q; Liu, Yalan Y; Zhong, Yunshi Y; Chen, Tianyin T; Zhou, Pinghong P; Zhao, Jian-Yuan JY; Hou, Yingyong Y; Ding, Chen C

Publication Date: 2023-03-25

Variant appearance in text: rs9357155

PubMed Link: 36966136

Variant Present in the following documents:

• 41467_2023_37440_MOESM4_ESM.xlsx, sheet 2

View BVdb publication page

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JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states.

Cancer Research

Stevens, Laura E LE; Peluffo, Guillermo G; Qiu, Xintao X; Temko, Daniel D; Fassl, Anne A; Li, Zheqi Z; Trinh, Anne A; Seehawer, Marco M; Jovanovic, Bojana B; Aleckovic, Masa M; Wilde, Callahan M CM; Geck, Renee C RC; Shu, Shaokun S; Kingston, Natalie L NL; Harper, Nicholas W NW; Almendro, Vanessa V; Pyke, Alanna L AL; Egri, Shawn B SB; Papanastasiou, Malvina M; Clement, Kendell K; Zhou, Ningxuan N; Walker, Sarah S; Salas, Jacqueline J; Park, So Yeon SY; Frank, David A DA; Meissner, Alexander A; Jaffe, Jacob D JD; Sicinski, Piotr P; Toker, Alex A; Michor, Franziska F; Long, Henry W HW; Overmoyer, Beth A BA; Polyak, Kornelia K

Publication Date: 2022-11-21

Variant appearance in text: PSMB8: 537+63C>T; rs9357155

PubMed Link: 36409824

Variant Present in the following documents:

• can-22-0423_supplementary_table_s3_suppst3.xlsx, sheet 1

View BVdb publication page

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MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals.

Frontiers In Immunology

Castelli, Erick C EC; de Castro, Mateus V MV; Naslavsky, Michel S MS; Scliar, Marilia O MO; Silva, Nayane S B NSB; Andrade, Heloisa S HS; Souza, Andreia S AS; Pereira, Raphaela N RN; Castro, Camila F B CFB; Mendes-Junior, Celso T CT; Meyer, Diogo D; Nunes, Kelly K; Matos, Larissa R B LRB; Silva, Monize V R MVR; Wang, Jaqueline Y T JYT; Esposito, Joyce J; Coria, Vivian R VR; Bortolin, Raul H RH; Hirata, Mario H MH; Magawa, Jhosiene Y JY; Cunha-Neto, Edecio E; Coelho, Verônica V; Santos, Keity S KS; Marin, Maria Lucia C MLC; Kalil, Jorge J; Mitne-Neto, Miguel M; Maciel, Rui M B RMB; Passos-Bueno, Maria Rita MR; Zatz, Mayana M

Publication Date: 2021

Variant appearance in text: rs9357155

PubMed Link: 34650566

Variant Present in the following documents:

• Table_3.xlsx, sheet 3
• Table_3.xlsx, sheet 4
• Table_3.xlsx, sheet 1
• Table_3.xlsx, sheet 5
• Table_3.xlsx, sheet 2

View BVdb publication page

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Novel germline TRAF3IP3 mutation in a dyad with familial acute B lymphoblastic leukemia.

Cancer Reports (Hoboken, N.J.)

Pommert, Lauren L; Burns, Robert R; Furumo, Quinlan Q; Pulakanti, Kirthi K; Brandt, Jon J; Burke, Michael J MJ; Rao, Sridhar S

Publication Date: 2021-06

Variant appearance in text: PSMB8: 537+63C>T; rs9357155

PubMed Link: 33503336

Variant Present in the following documents:

• CNR2-4-e1335-s003.xlsx, sheet 1

View BVdb publication page

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IgA Nephropathy Genetic Risk Score to Estimate the Prevalence of IgA Nephropathy in UK Biobank.

Kidney International Reports

Sukcharoen, Kittiya K; Sharp, Seth A SA; Thomas, Nicholas J NJ; Kimmitt, Robert A RA; Harrison, Jamie J; Bingham, Coralie C; Mozere, Monika M; Weedon, Michael N MN; Tyrrell, Jessica J; Barratt, Jonathan J; Gale, Daniel P DP; Oram, Richard A RA

Publication Date: 2020-10

Variant appearance in text: rs9357155

PubMed Link: 33102956

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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[Trans-ethnic analysis of susceptibility variants in IgA nephropathy].

Beijing Da Xue Xue Bao. Yi Xue Ban = Journal Of Peking University. Health Sciences

Kang, Y Q YQ; Zhang, Y M YM; Hou, P P; Shi, S F SF; Liu, L J LJ; Zhou, X J XJ; Lv, J C JC; Zhang, H H

Publication Date: 2019-06-18

Variant appearance in text: rs9357155

PubMed Link: 31209417

Variant Present in the following documents:

• Main text

View BVdb publication page

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Molecular insights into genome-wide association studies of chronic kidney disease-defining traits.

Nature Communications

Xu, Xiaoguang X; Eales, James M JM; Akbarov, Artur A; Guo, Hui H; Becker, Lorenz L; Talavera, David D; Ashraf, Fehzan F; Nawaz, Jabran J; Pramanik, Sanjeev S; Bowes, John J; Jiang, Xiao X; Dormer, John J; Denniff, Matthew M; Antczak, Andrzej A; Szulinska, Monika M; Wise, Ingrid I; Prestes, Priscilla R PR; Glyda, Maciej M; Bogdanski, Pawel P; Zukowska-Szczechowska, Ewa E; Berzuini, Carlo C; Woolf, Adrian S AS; Samani, Nilesh J NJ; Charchar, Fadi J FJ; Tomaszewski, Maciej M

Publication Date: 2018-11-22

Variant appearance in text: rs9357155

PubMed Link: 30467309

Variant Present in the following documents:

• 41467_2018_Article_7260.pdf

View BVdb publication page

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Fine-mapping of HLA class I and class II genes identified two independent novel variants associated with nasopharyngeal carcinoma susceptibility.

Cancer Medicine

Wang, Tong-Min TM; Zhou, Ting T; He, Yong-Qiao YQ; Xue, Wen-Qiong WQ; Zhang, Jiang-Bo JB; Zheng, Xiao-Hui XH; Li, Xi-Zhao XZ; Zhang, Shao-Dan SD; Zeng, Yi-Xin YX; Jia, Wei-Hua WH

Publication Date: 2018-12

Variant appearance in text: rs9357155

PubMed Link: 30378292

Variant Present in the following documents:

• CAM4-7-6308-s006.xlsx, sheet 1

View BVdb publication page

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Genomic approaches in the search for molecular biomarkers in chronic kidney disease.

Journal Of Translational Medicine

Cañadas-Garre, M M; Anderson, K K; McGoldrick, J J; Maxwell, A P AP; McKnight, A J AJ

Publication Date: 2018-10-25

Variant appearance in text: rs9357155

PubMed Link: 30359254

Variant Present in the following documents:

• Main text
• 12967_2018_Article_1664.pdf

View BVdb publication page

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Genetic Evidence Supporting the Role of the Calcium Channel, CACNA1S, in Tooth Cusp and Root Patterning.

Frontiers In Physiology

Laugel-Haushalter, Virginie V; Morkmued, Supawich S; Stoetzel, Corinne C; Geoffroy, Véronique V; Muller, Jean J; Boland, Anne A; Deleuze, Jean-François JF; Chennen, Kirsley K; Pitiphat, Waranuch W; Dollfus, Hélène H; Niederreither, Karen K; Bloch-Zupan, Agnès A; Pungchanchaikul, Patimaporn P

Publication Date: 2018

Variant appearance in text: rs9357155

PubMed Link: 30319441

Variant Present in the following documents:

• Table_6.xlsx, sheet 1

View BVdb publication page

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IgA Nephropathy Susceptibility Loci and Disease Progression.

Clinical Journal Of The American Society Of Nephrology : Cjasn

Shi, Manman M; Ouyang, Yan Y; Yang, Mingxin M; Yang, Meng M; Zhang, Xiaoyan X; Huang, Wei W; Wang, Weiming W; Wang, Zhaohui Z; Zhang, Wen W; Chen, Xiaonong X; Pan, Xiaoxia X; Ren, Hong H; Chen, Nan N; Xie, Jingyuan J

Publication Date: 2018-09-07

Variant appearance in text: rs9357155

PubMed Link: 30042224

Variant Present in the following documents:

• Main text

View BVdb publication page

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What Genetics Tells Us About the Pathogenesis of IgA Nephropathy: The Role of Immune Factors and Infection.

Kidney International Reports

Zhang, Yue-Miao YM; Zhou, Xu-Jie XJ; Zhang, Hong H

Publication Date: 2017-05

Variant appearance in text: rs9357155

PubMed Link: 29142962

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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Risk alleles for IgA nephropathy-associated SNPs conferred completely opposite effects to idiopathic membranous nephropathy in Chinese Han.

Immunologic Research

Qin, Xiaosong X; Wang, Chen C; Lu, Guanting G; Peng, Mengle M; Cheng, Guixue G; Zhu, Hongquan H; Cao, Yun Y; Liu, Jianhua J; Li, Yuzhong Y; Cai, Hong H; Yang, Funing F; Liu, Yanhong Y; Chen, Xiaoyu X; Li, Liubing L; Wan, Nan N; Wen, Xiaoting X; Li, Shijun S; Nie, Ruili R; Qin, Dongchun D; Li, Yongzhe Y; Liu, Yong Y

Publication Date: 2017-10

Variant appearance in text: rs9357155

PubMed Link: 28929317

Variant Present in the following documents:

• Main text
• 12026_2017_Article_8947.pdf

View BVdb publication page

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Genetic epidemiology in kidney disease.

Nephrology, Dialysis, Transplantation : Official Publication Of The European Dialysis And Transplant Association - European Renal Association

Ainsworth, Hannah C HC; Langefeld, Carl D CD; Freedman, Barry I BI

Publication Date: 2017-04-01

Variant appearance in text: rs9357155

PubMed Link: 28201750

Variant Present in the following documents:

• Main text

View BVdb publication page

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Alternate-locus aware variant calling in whole genome sequencing.

Genome Medicine

Jäger, Marten M; Schubach, Max M; Zemojtel, Tomasz T; Reinert, Knut K; Church, Deanna M DM; Robinson, Peter N PN

Publication Date: 2016-12-13

Variant appearance in text: rs9357155

PubMed Link: 27964746

Variant Present in the following documents:

• 13073_2016_383_MOESM1_ESM.pdf

View BVdb publication page

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Identification of new susceptibility loci for IgA nephropathy in Han Chinese.

Nature Communications

Li, Ming M; Foo, Jia-Nee JN; Wang, Jin-Quan JQ; Low, Hui-Qi HQ; Tang, Xue-Qing XQ; Toh, Kai-Yee KY; Yin, Pei-Ran PR; Khor, Chiea-Chuen CC; Goh, Yu-Fen YF; Irwan, Ishak D ID; Xu, Ri-Cong RC; Andiappan, Anand K AK; Bei, Jin-Xin JX; Rotzschke, Olaf O; Chen, Meng-Hua MH; Cheng, Ching-Yu CY; Sun, Liang-Dan LD; Jiang, Geng-Ru GR; Wong, Tien-Yin TY; Lin, Hong-Li HL; Aung, Tin T; Liao, Yun-Hua YH; Saw, Seang-Mei SM; Ye, Kun K; Ebstein, Richard P RP; Chen, Qin-Kai QK; Shi, Wei W; Chew, Soo-Hong SH; Chen, Jian J; Zhang, Fu-Ren FR; Li, Sheng-Ping SP; Xu, Gang G; Shyong Tai, E E; Wang, Li L; Chen, Nan N; Zhang, Xue-Jun XJ; Zeng, Yi-Xin YX; Zhang, Hong H; Liu, Zhi-Hong ZH; Yu, Xue-Qing XQ; Liu, Jian-Jun JJ

Publication Date: 2015-06-01

Variant appearance in text: rs9357155

PubMed Link: 26028593

Variant Present in the following documents:

• ncomms8270-s1.pdf

View BVdb publication page

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Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.

Nature Genetics

Kiryluk, Krzysztof K; Li, Yifu Y; Scolari, Francesco F; Sanna-Cherchi, Simone S; Choi, Murim M; Verbitsky, Miguel M; Fasel, David D; Lata, Sneh S; Prakash, Sindhuri S; Shapiro, Samantha S; Fischman, Clara C; Snyder, Holly J HJ; Appel, Gerald G; Izzi, Claudia C; Viola, Battista Fabio BF; Dallera, Nadia N; Del Vecchio, Lucia L; Barlassina, Cristina C; Salvi, Erika E; Bertinetto, Francesca Eleonora FE; Amoroso, Antonio A; Savoldi, Silvana S; Rocchietti, Marcella M; Amore, Alessandro A; Peruzzi, Licia L; Coppo, Rosanna R; Salvadori, Maurizio M; Ravani, Pietro P; Magistroni, Riccardo R; Ghiggeri, Gian Marco GM; Caridi, Gianluca G; Bodria, Monica M; Lugani, Francesca F; Allegri, Landino L; Delsante, Marco M; Maiorana, Mariarosa M; Magnano, Andrea A; Frasca, Giovanni G; Boer, Emanuela E; Boscutti, Giuliano G; Ponticelli, Claudio C; Mignani, Renzo R; Marcantoni, Carmelita C; Di Landro, Domenico D; Santoro, Domenico D; Pani, Antonello A; Polci, Rosaria R; Feriozzi, Sandro S; Chicca, Silvana S; Galliani, Marco M; Gigante, Maddalena M; Gesualdo, Loreto L; Zamboli, Pasquale P; Battaglia, Giovanni Giorgio GG; Garozzo, Maurizio M; Maixnerová, Dita D; Tesar, Vladimir V; Eitner, Frank F; Rauen, Thomas T; Floege, Jürgen J; Kovacs, Tibor T; Nagy, Judit J; Mucha, Krzysztof K; Pączek, Leszek L; Zaniew, Marcin M; Mizerska-Wasiak, Małgorzata M; Roszkowska-Blaim, Maria M; Pawlaczyk, Krzysztof K; Gale, Daniel D; Barratt, Jonathan J; Thibaudin, Lise L; Berthoux, Francois F; Canaud, Guillaume G; Boland, Anne A; Metzger, Marie M; Panzer, Ulf U; Suzuki, Hitoshi H; Goto, Shin S; Narita, Ichiei I; Caliskan, Yasar Y; Xie, Jingyuan J; Hou, Ping P; Chen, Nan N; Zhang, Hong H; Wyatt, Robert J RJ; Novak, Jan J; Julian, Bruce A BA; Feehally, John J; Stengel, Benedicte B; Cusi, Daniele D; Lifton, Richard P RP; Gharavi, Ali G AG

Publication Date: 2014-11

Variant appearance in text: rs9357155

PubMed Link: 25305756

Variant Present in the following documents:

• NIHMS630801-supplement-1.pdf

View BVdb publication page

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Cellular signaling and production of galactose-deficient IgA1 in IgA nephropathy, an autoimmune disease.

Journal Of Immunology Research

Reily, Colin C; Ueda, Hiroyuki H; Huang, Zhi-Qiang ZQ; Mestecky, Jiri J; Julian, Bruce A BA; Willey, Christopher D CD; Novak, Jan J

Publication Date: 2014

Variant appearance in text: rs9357155

PubMed Link: 25152896

Variant Present in the following documents:

• Main text

View BVdb publication page

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Brief Report: identification of MTMR3 as a novel susceptibility gene for lupus nephritis in northern Han Chinese by shared-gene analysis with IgA nephropathy.

Arthritis & Rheumatology (Hoboken, N.J.)

Zhou, Xu-Jie XJ; Nath, Swapan K SK; Qi, Yuan-Yuan YY; Cheng, Fa-Juan FJ; Yang, Hai-Zhen HZ; Zhang, Yan Y; Yang, Wanling W; Ma, Jian-Yang JY; Zhao, Ming-Hui MH; Shen, Nan N; Zhang, Hong H

Publication Date: 2014-10

Variant appearance in text: rs9357155

PubMed Link: 24943867

Variant Present in the following documents:

• Main text

View BVdb publication page

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Cumulative effects of variants identified by genome-wide association studies in IgA nephropathy.

Scientific Reports

Zhou, Xu-Jie XJ; Qi, Yuan-Yuan YY; Hou, Ping P; Lv, Ji-Cheng JC; Shi, Su-Fang SF; Liu, Li-Jun LJ; Zhao, Na N; Zhang, Hong H

Publication Date: 2014-05-09

Variant appearance in text: rs9357155

PubMed Link: 24811838

Variant Present in the following documents:

• Main text

View BVdb publication page

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Host genetics and immune control of HIV-1 infection: fine mapping for the extended human MHC region in an African cohort.

Genes And Immunity

Prentice, H A HA; Pajewski, N M NM; He, D D; Zhang, K K; Brown, E E EE; Kilembe, W W; Allen, S S; Hunter, E E; Kaslow, R A RA; Tang, J J

Publication Date: 2014

Variant appearance in text: rs9357155

PubMed Link: 24784026

Variant Present in the following documents:

• NIHMS580846-supplement-1.xlsx, sheet 3
• NIHMS580846-supplement-1.xlsx, sheet 2

View BVdb publication page

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Heritability and genomics of gene expression in peripheral blood.

Nature Genetics

Wright, Fred A FA; Sullivan, Patrick F PF; Brooks, Andrew I AI; Zou, Fei F; Sun, Wei W; Xia, Kai K; Madar, Vered V; Jansen, Rick R; Chung, Wonil W; Zhou, Yi-Hui YH; Abdellaoui, Abdel A; Batista, Sandra S; Butler, Casey C; Chen, Guanhua G; Chen, Ting-Huei TH; D'Ambrosio, David D; Gallins, Paul P; Ha, Min Jin MJ; Hottenga, Jouke Jan JJ; Huang, Shunping S; Kattenberg, Mathijs M; Kochar, Jaspreet J; Middeldorp, Christel M CM; Qu, Ani A; Shabalin, Andrey A; Tischfield, Jay J; Todd, Laura L; Tzeng, Jung-Ying JY; van Grootheest, Gerard G; Vink, Jacqueline M JM; Wang, Qi Q; Wang, Wei W; Wang, Weibo W; Willemsen, Gonneke G; Smit, Johannes H JH; de Geus, Eco J EJ; Yin, Zhaoyu Z; Penninx, Brenda W J H BW; Boomsma, Dorret I DI

Publication Date: 2014-05

Variant appearance in text: rs9357155

PubMed Link: 24728292

Variant Present in the following documents:

• NIHMS576016-supplement-1.pdf

View BVdb publication page

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The primary glomerulonephritides: a systems biology approach.

Nature Reviews. Nephrology

Jiang, Song S; Chuang, Peter Y PY; Liu, Zhi-Hong ZH; He, John C JC

Publication Date: 2013-09

Variant appearance in text: rs9357155

PubMed Link: 23856995

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genetic studies of IgA nephropathy: what have we learned from genome-wide association studies.

Contributions To Nephrology

Xie, Jingyuan J; Shapiro, Samantha S; Gharavi, Ali A

Publication Date: 2013

Variant appearance in text: rs9357155

PubMed Link: 23689567

Variant Present in the following documents:

• Main text

View BVdb publication page

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Geographic differences in genetic susceptibility to IgA nephropathy: GWAS replication study and geospatial risk analysis.

Plos Genetics

Kiryluk, Krzysztof K; Li, Yifu Y; Sanna-Cherchi, Simone S; Rohanizadegan, Mersedeh M; Suzuki, Hitoshi H; Eitner, Frank F; Snyder, Holly J HJ; Choi, Murim M; Hou, Ping P; Scolari, Francesco F; Izzi, Claudia C; Gigante, Maddalena M; Gesualdo, Loreto L; Savoldi, Silvana S; Amoroso, Antonio A; Cusi, Daniele D; Zamboli, Pasquale P; Julian, Bruce A BA; Novak, Jan J; Wyatt, Robert J RJ; Mucha, Krzysztof K; Perola, Markus M; Kristiansson, Kati K; Viktorin, Alexander A; Magnusson, Patrik K PK; Thorleifsson, Gudmar G; Thorsteinsdottir, Unnur U; Stefansson, Kari K; Boland, Anne A; Metzger, Marie M; Thibaudin, Lise L; Wanner, Christoph C; Jager, Kitty J KJ; Goto, Shin S; Maixnerova, Dita D; Karnib, Hussein H HH; Nagy, Judit J; Panzer, Ulf U; Xie, Jingyuan J; Chen, Nan N; Tesar, Vladimir V; Narita, Ichiei I; Berthoux, Francois F; Floege, Jürgen J; Stengel, Benedicte B; Zhang, Hong H; Lifton, Richard P RP; Gharavi, Ali G AG

Publication Date: 2012

Variant appearance in text: rs9357155

PubMed Link: 22737082

Variant Present in the following documents:

• Main text
• pgen.1002765.pdf

View BVdb publication page

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Proteasome immunosubunits protect against the development of CD8 T cell-mediated autoimmune diseases.

Journal Of Immunology (Baltimore, Md. : 1950)

Zaiss, Dietmar M W DM; Bekker, Cornelis P J CP; Gröne, Andrea A; Lie, Benedicte A BA; Sijts, Alice J A M AJ

Publication Date: 2011-09-01

Variant appearance in text: rs9357155

PubMed Link: 21804012

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genome-wide association study identifies susceptibility loci for IgA nephropathy.

Nature Genetics

Gharavi, Ali G AG; Kiryluk, Krzysztof K; Choi, Murim M; Li, Yifu Y; Hou, Ping P; Xie, Jingyuan J; Sanna-Cherchi, Simone S; Men, Clara J CJ; Julian, Bruce A BA; Wyatt, Robert J RJ; Novak, Jan J; He, John C JC; Wang, Haiyan H; Lv, Jicheng J; Zhu, Li L; Wang, Weiming W; Wang, Zhaohui Z; Yasuno, Kasuhito K; Gunel, Murat M; Mane, Shrikant S; Umlauf, Sheila S; Tikhonova, Irina I; Beerman, Isabel I; Savoldi, Silvana S; Magistroni, Riccardo R; Ghiggeri, Gian Marco GM; Bodria, Monica M; Lugani, Francesca F; Ravani, Pietro P; Ponticelli, Claudio C; Allegri, Landino L; Boscutti, Giuliano G; Frasca, Giovanni G; Amore, Alessandro A; Peruzzi, Licia L; Coppo, Rosanna R; Izzi, Claudia C; Viola, Battista Fabio BF; Prati, Elisabetta E; Salvadori, Maurizio M; Mignani, Renzo R; Gesualdo, Loreto L; Bertinetto, Francesca F; Mesiano, Paola P; Amoroso, Antonio A; Scolari, Francesco F; Chen, Nan N; Zhang, Hong H; Lifton, Richard P RP

Publication Date: 2011-03-13

Variant appearance in text: rs9357155

PubMed Link: 21399633

Variant Present in the following documents:

• Main text

View BVdb publication page

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Discovery of regulatory elements in human ATP-binding cassette transporters through expression quantitative trait mapping.

The Pharmacogenomics Journal

Matsson, P P; Yee, S W SW; Markova, S S; Morrissey, K K; Jenkins, G G; Xuan, J J; Jorgenson, E E; Kroetz, D L DL; Giacomini, K M KM

Publication Date: 2012-06

Variant appearance in text: rs9357155

PubMed Link: 21383772

Variant Present in the following documents:

• Main text

View BVdb publication page

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