Publications:

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.

Nature Communications

Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA

Publication Date: 2023-04-03

Variant appearance in text: EGFR: K745k

PubMed Link: 37012232

Variant Present in the following documents:

• 41467_2023_37547_MOESM10_ESM.xlsx, sheet 2

View BVdb publication page

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Predictive mutation signature of immunotherapy benefits in NSCLC based on machine learning algorithms.

Frontiers In Immunology

Liu, Zhichao Z; Lin, Guo G; Yan, Zeping Z; Li, Linduo L; Wu, Xingchen X; Shi, Jingrong J; He, Jianxing J; Zhao, Lei L; Liang, Hengrui H; Wang, Wei W

Publication Date: 2022

Variant appearance in text: EGFR: 2235G>A; K745K

PubMed Link: 36238300

Variant Present in the following documents:

• Table_1.xlsx, sheet 4

View BVdb publication page

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EPHA5 mutation was associated with adverse outcome of atezolizumab treatment in late-stage non-small cell lung cancers.

Bmc Pulmonary Medicine

Li, Zhenxiang Z; Zhou, Qing Q; Wang, Qi Q; Wang, Haiyong H; Yue, Weiming W

Publication Date: 2022-09-19

Variant appearance in text: EGFR: 2235G>A; K745K

PubMed Link: 36123678

Variant Present in the following documents:

• 12890_2022_2161_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Meta-Data Analysis to Explore the Hub of the Hub-Genes That Influence SARS-CoV-2 Infections Highlighting Their Pathogenetic Processes and Drugs Repurposing.

Vaccines

Mosharaf, Md Parvez MP; Kibria, Md Kaderi MK; Hossen, Md Bayazid MB; Islam, Md Ariful MA; Reza, Md Selim MS; Mahumud, Rashidul Alam RA; Alam, Khorshed K; Gow, Jeff J; Mollah, Md Nurul Haque MNH

Publication Date: 2022-08-03

Variant appearance in text: EGFR: LYS745LYS

PubMed Link: 36016137

Variant Present in the following documents:

• vaccines-10-01248.pdf

View BVdb publication page

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Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.

Plos One

Prentice, Leah M LM; Miller, Ruth R RR; Knaggs, Jeff J; Mazloomian, Alborz A; Aguirre Hernandez, Rosalia R; Franchini, Patrick P; Parsa, Kourosh K; Tessier-Cloutier, Basile B; Lapuk, Anna A; Huntsman, David D; Schaeffer, David F DF; Sheffield, Brandon S BS

Publication Date: 2018

Variant appearance in text: EGFR: K745K

PubMed Link: 29698444

Variant Present in the following documents:

• pone.0196434.s001.xlsx, sheet 3
• pone.0196434.s001.xlsx, sheet 2

View BVdb publication page

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Anti-tumor efficacy of theliatinib in esophageal cancer patient-derived xenografts models with epidermal growth factor receptor (EGFR) overexpression and gene amplification.

Oncotarget

Ren, Yongxin Y; Zheng, Jianming J; Fan, Shiming S; Wang, Linfang L; Cheng, Min M; Shi, Dongxia D; Zhang, Wei W; Tang, Renxiang R; Yu, Ying Y; Jiao, Longxian L; Ni, Jun J; Yang, Haibin H; Cai, Huaqing H; Yin, Fang F; Chen, Yunxin Y; Zhou, Feng F; Zhang, Weihan W; Qing, Weiguo W; Su, Weiguo W

Publication Date: 2017-08-01

Variant appearance in text: EGFR: K745K

PubMed Link: 28881608

Variant Present in the following documents:

• Main text
• oncotarget-08-50832-s002.xlsx, sheet 1
• oncotarget-08-50832.pdf

View BVdb publication page

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Circulating tumour DNA sequence analysis as an alternative to multiple myeloma bone marrow aspirates.

Nature Communications

Kis, Olena O; Kaedbey, Rayan R; Chow, Signy S; Danesh, Arnavaz A; Dowar, Mark M; Li, Tiantian T; Li, Zhihua Z; Liu, Jessica J; Mansour, Mark M; Masih-Khan, Esther E; Zhang, Tong T; Bratman, Scott V SV; Oza, Amit M AM; Kamel-Reid, Suzanne S; Trudel, Suzanne S; Pugh, Trevor J TJ

Publication Date: 2017-05-11

Variant appearance in text: ERBB: 2235G>A

PubMed Link: 28492226

Variant Present in the following documents:

• ncomms15086-s3.xlsx, sheet 1

View BVdb publication page

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Complex mutations & subpopulations of deletions at exon 19 of EGFR in NSCLC revealed by next generation sequencing: potential clinical implications.

Plos One

Marchetti, Antonio A; Del Grammastro, Maela M; Filice, Giampaolo G; Felicioni, Lara L; Rossi, Giulio G; Graziano, Paolo P; Sartori, Giuliana G; Leone, Alvaro A; Malatesta, Sara S; Iacono, Michele M; Guetti, Luigi L; Viola, Patrizia P; Mucilli, Felice F; Cuccurullo, Franco F; Buttitta, Fiamma F

Publication Date: 2012

Variant appearance in text: EGFR: 2235G>A

PubMed Link: 22848739

Variant Present in the following documents:

• pone.0042164.s003.xls, sheet 1

View BVdb publication page

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A panel of high resolution melting (HRM) technology-based assays with direct sequencing possibility for effective mutation screening of EGFR and K-ras genes.

Cellular Oncology : The Official Journal Of The International Society For Cellular Oncology

Heideman, D A M DA; Thunnissen, F B FB; Doeleman, M M; Kramer, D D; Verheul, H M HM; Smit, E F EF; Postmus, P E PE; Meijer, C J L M CJ; Meijer, G A GA; Snijders, P J F PJ

Publication Date: 2009

Variant appearance in text: EGFR: K745K

PubMed Link: 19759413

Variant Present in the following documents:

• ACP-2009-31-5-465850.pdf

View BVdb publication page

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