Integration of intra-sample contextual error modeling for improved detection of somatic mutations from deep sequencing.
Science Advances
Abelson, Sagi S; Zeng, Andy G X AGX; Nofech-Mozes, Ido I; Wang, Ting Ting TT; Ng, Stanley W K SWK; Minden, Mark D MD; Pugh, Trevor J TJ; Awadalla, Philip P; Shlush, Liran I LI; Murphy, Tracy T; Chan, Steven M SM; Dick, John E JE; Bratman, Scott V SV
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling.
Cell
Creixell, Pau P; Schoof, Erwin M EM; Simpson, Craig D CD; Longden, James J; Miller, Chad J CJ; Lou, Hua Jane HJ; Perryman, Lara L; Cox, Thomas R TR; Zivanovic, Nevena N; Palmeri, Antonio A; Wesolowska-Andersen, Agata A; Helmer-Citterich, Manuela M; Ferkinghoff-Borg, Jesper J; Itamochi, Hiroaki H; Bodenmiller, Bernd B; Erler, Janine T JT; Turk, Benjamin E BE; Linding, Rune R
Amplicon sequencing of colorectal cancer: variant calling in frozen and formalin-fixed samples.
Plos One
Betge, Johannes J; Kerr, Grainne G; Miersch, Thilo T; Leible, Svenja S; Erdmann, Gerrit G; Galata, Christian L CL; Zhan, Tianzuo T; Gaiser, Timo T; Post, Stefan S; Ebert, Matthias P MP; Horisberger, Karoline K; Boutros, Michael M
Screening for EGFR and KRAS mutations in non-small cell lung carcinomas using DNA extraction by hydrothermal pressure coupled with PCR-based direct sequencing.
International Journal Of Clinical And Experimental Pathology
Liu, Yan Y; Wu, Bing-Quan BQ; Zhong, Hao-Hao HH; Hui, Pei P; Fang, Wei-Gang WG
Clinical and biomarker outcomes of the phase II vandetanib study from the BATTLE trial.
Journal Of Thoracic Oncology : Official Publication Of The International Association For The Study Of Lung Cancer
Tsao, Anne S AS; Liu, Suyu S; Lee, J Jack JJ; Alden, Christine M CM; Blumenschein, George R GR; Herbst, Roy R; Davis, Suzanne E SE; Kim, Edward E; Lippman, Scott S; Heymach, John J; Tran, Hai H; Tang, XiMing X; Wistuba, Ignacio I; Hong, Waun Ki WK
DNA-Mutation Inventory to Refine and Enhance Cancer Treatment (DIRECT): a catalog of clinically relevant cancer mutations to enable genome-directed anticancer therapy.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Yeh, Paul P; Chen, Heidi H; Andrews, Jenny J; Naser, Riyad R; Pao, William W; Horn, Leora L
Impact of epidermal growth factor receptor and KRAS mutations on clinical outcomes in previously untreated non-small cell lung cancer patients: results of an online tumor registry of clinical trials.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Jackman, David M DM; Miller, Vincent A VA; Cioffredi, Leigh-Anne LA; Yeap, Beow Y BY; Jänne, Pasi A PA; Riely, Gregory J GJ; Ruiz, Marielle Gallegos MG; Giaccone, Giuseppe G; Sequist, Lecia V LV; Johnson, Bruce E BE