Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states.
Cancer Research
Stevens, Laura E LE; Peluffo, Guillermo G; Qiu, Xintao X; Temko, Daniel D; Fassl, Anne A; Li, Zheqi Z; Trinh, Anne A; Seehawer, Marco M; Jovanovic, Bojana B; Aleckovic, Masa M; Wilde, Callahan M CM; Geck, Renee C RC; Shu, Shaokun S; Kingston, Natalie L NL; Harper, Nicholas W NW; Almendro, Vanessa V; Pyke, Alanna L AL; Egri, Shawn B SB; Papanastasiou, Malvina M; Clement, Kendell K; Zhou, Ningxuan N; Walker, Sarah S; Salas, Jacqueline J; Park, So Yeon SY; Frank, David A DA; Meissner, Alexander A; Jaffe, Jacob D JD; Sicinski, Piotr P; Toker, Alex A; Michor, Franziska F; Long, Henry W HW; Overmoyer, Beth A BA; Polyak, Kornelia K
Publication Date: 2022-11-21
Variant appearance in text: WDYHV1: 346T>A; rs6470147
Beneficial effects of mifepristone treatment in breast cancer patients selected by the progesterone receptor isoform ratio: Results from the MIPRA trial.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Elía, Andrés A; Saldain, Leo L; Vanzulli, Silvia I SI; Helguero, Luisa A LA; Lamb, Caroline A CA; Fabris, Victoria V; Pataccini, Gabriela G; Martínez-Vazquez, Paula P; Burruchaga, Javier J; Caillet-Bois, Ines I; Spengler, Eunice E; Acosta Haab, Gabriela G; Liguori, Marcos M; Castets, Alejandra A; Lovisi, Silvia S; Abascal, María F MF; Novaro, Virginia V; Sánchez, Jana J; Muñoz, Javier J; Belizán, Jose M JM; Abba, Martín C MC; Gass, Hugo H; Rojas, Paola P; Lanari, Claudia C
Publication Date: 2022-10-21
Variant appearance in text: WDYHV1: 346T>A; rs6470147
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions.
Npj Parkinson'S Disease
Cukier, Holly N HN; Kim, Hyunjin H; Griswold, Anthony J AJ; Codreanu, Simona G SG; Prince, Lisa M LM; Sherrod, Stacy D SD; McLean, John A JA; Dykxhoorn, Derek M DM; Ess, Kevin C KC; Hedera, Peter P; Bowman, Aaron B AB; Neely, M Diana MD
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: WDYHV1: 346T>A; rs6470147
Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells.
Npj Systems Biology And Applications
Immanuel, Selva Rupa Christinal SRC; Ghanate, Avinash D AD; Parmar, Dharmeshkumar S DS; Yadav, Ritu R; Uthup, Riya R; Panchagnula, Venkateswarlu V; Raghunathan, Anu A
Publication Date: 2021-01-08
Variant appearance in text: WDYHV1: 346T>A; rs6470147
High throughput profiling of undifferentiated pleomorphic sarcomas identifies two main subgroups with distinct immune profile, clinical outcome and sensitivity to targeted therapies.
Ebiomedicine
Toulmonde, Maud M; Lucchesi, Carlo C; Verbeke, Stéphanie S; Crombe, Amandine A; Adam, Julien J; Geneste, Damien D; Chaire, Vanessa V; Laroche-Clary, Audrey A; Perret, Raul R; Bertucci, François F; Bertolo, Frederic F; Bianchini, Laurence L; Dadone-Montaudie, Bérengère B; Hembrough, Todd T; Sweet, Steve S; Kim, Yeoun Jin YJ; Cecchi, Fabiola F; Le Loarer, François F; Italiano, Antoine A
Publication Date: 2020-12
Variant appearance in text: WDYHV1: 346T>A; rs6470147
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Publication Date: 2019-10-09
Variant appearance in text: WDYHV1: F116I; rs6470147
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Publication Date: 2019-03-20
Variant appearance in text: WDYHV1: F116I; rs6470147
Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors.
Cell Reports
Vigilante, Alessandra A; Laddach, Anna A; Moens, Nathalie N; Meleckyte, Ruta R; Leha, Andreas A; Ghahramani, Arsham A; Culley, Oliver J OJ; Kathuria, Annie A; Hurling, Chloe C; Vickers, Alice A; Wiseman, Erika E; Tewary, Mukul M; Zandstra, Peter W PW; , ; Durbin, Richard R; Fraternali, Franca F; Stegle, Oliver O; Birney, Ewan E; Luscombe, Nicholas M NM; Danovi, Davide D; Watt, Fiona M FM
Generation of a High Number of Healthy Erythroid Cells from Gene-Edited Pyruvate Kinase Deficiency Patient-Specific Induced Pluripotent Stem Cells.
Stem Cell Reports
Garate, Zita Z; Quintana-Bustamante, Oscar O; Crane, Ana M AM; Olivier, Emmanuel E; Poirot, Laurent L; Galetto, Roman R; Kosinski, Penelope P; Hill, Collin C; Kung, Charles C; Agirre, Xabi X; Orman, Israel I; Cerrato, Laura L; Alberquilla, Omaira O; Rodriguez-Fornes, Fatima F; Fusaki, Noemi N; Garcia-Sanchez, Felix F; Maia, Tabita M TM; Ribeiro, Maria L ML; Sevilla, Julian J; Prosper, Felipe F; Jin, Shengfang S; Mountford, Joanne J; Guenechea, Guillermo G; Gouble, Agnes A; Bueren, Juan A JA; Davis, Brian R BR; Segovia, Jose C JC
Publication Date: 2015-12-08
Variant appearance in text: WDYHV1: F116I; rs6470147
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: WDYHV1: F116I; rs6470147
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations.
Nature Genetics
Buczkowicz, Pawel P; Hoeman, Christine C; Rakopoulos, Patricia P; Pajovic, Sanja S; Letourneau, Louis L; Dzamba, Misko M; Morrison, Andrew A; Lewis, Peter P; Bouffet, Eric E; Bartels, Ute U; Zuccaro, Jennifer J; Agnihotri, Sameer S; Ryall, Scott S; Barszczyk, Mark M; Chornenkyy, Yevgen Y; Bourgey, Mathieu M; Bourque, Guillaume G; Montpetit, Alexandre A; Cordero, Francisco F; Castelo-Branco, Pedro P; Mangerel, Joshua J; Tabori, Uri U; Ho, King Ching KC; Huang, Annie A; Taylor, Kathryn R KR; Mackay, Alan A; Bendel, Anne E AE; Nazarian, Javad J; Fangusaro, Jason R JR; Karajannis, Matthias A MA; Zagzag, David D; Foreman, Nicholas K NK; Donson, Andrew A; Hegert, Julia V JV; Smith, Amy A; Chan, Jennifer J; Lafay-Cousin, Lucy L; Dunn, Sandra S; Hukin, Juliette J; Dunham, Chris C; Scheinemann, Katrin K; Michaud, Jean J; Zelcer, Shayna S; Ramsay, David D; Cain, Jason J; Brennan, Cameron C; Souweidane, Mark M MM; Jones, Chris C; Allis, C David CD; Brudno, Michael M; Becher, Oren O; Hawkins, Cynthia C
Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems.
Febs Open Bio
Szeto, Carol Ying-Ying CY; Lin, Chi Ho CH; Choi, Siu Chung SC; Yip, Timothy T C TT; Ngan, Roger Kai-Cheong RK; Tsao, George Sai-Wah GS; Li Lung, Maria M
Publication Date: 2014
Variant appearance in text: WDYHV1: F116I; rs6470147
Hexose-6-phosphate dehydrogenase: a new risk gene for multiple sclerosis.
European Journal Of Human Genetics : Ejhg
Alcina, Antonio A; Ramagopalan, Sreeram V SV; Fernández, Oscar O; Catalá-Rabasa, Antonio A; Fedetz, María M; Ndagire, Dorothy D; Leyva, Laura L; Arnal, Carmen C; Delgado, Concepción C; Lucas, Miguel M; Izquierdo, Guillermo G; Ebers, George C GC; Matesanz, Fuencisla F
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants.
Nature Genetics
, ; , ; Burton, Paul R PR; Clayton, David G DG; Cardon, Lon R LR; Craddock, Nick N; Deloukas, Panos P; Duncanson, Audrey A; Kwiatkowski, Dominic P DP; McCarthy, Mark I MI; Ouwehand, Willem H WH; Samani, Nilesh J NJ; Todd, John A JA; Donnelly, Peter P; Barrett, Jeffrey C JC; Davison, Dan D; Easton, Doug D; Evans, David M DM; Leung, Hin-Tak HT; Marchini, Jonathan L JL; Morris, Andrew P AP; Spencer, Chris C A CC; Tobin, Martin D MD; Attwood, Antony P AP; Boorman, James P JP; Cant, Barbara B; Everson, Ursula U; Hussey, Judith M JM; Jolley, Jennifer D JD; Knight, Alexandra S AS; Koch, Kerstin K; Meech, Elizabeth E; Nutland, Sarah S; Prowse, Christopher V CV; Stevens, Helen E HE; Taylor, Niall C NC; Walters, Graham R GR; Walker, Neil M NM; Watkins, Nicholas A NA; Winzer, Thilo T; Jones, Richard W RW; McArdle, Wendy L WL; Ring, Susan M SM; Strachan, David P DP; Pembrey, Marcus M; Breen, Gerome G; St Clair, David D; Caesar, Sian S; Gordon-Smith, Katharine K; Jones, Lisa L; Fraser, Christine C; Green, Elaine K EK; Grozeva, Detelina D; Hamshere, Marian L ML; Holmans, Peter A PA; Jones, Ian R IR; Kirov, George G; Moskivina, Valentina V; Nikolov, Ivan I; O'Donovan, Michael C MC; Owen, Michael J MJ; Collier, David A DA; Elkin, Amanda A; Farmer, Anne A; Williamson, Richard R; McGuffin, Peter P; Young, Allan H AH; Ferrier, I Nicol IN; Ball, Stephen G SG; Balmforth, Anthony J AJ; Barrett, Jennifer H JH; Bishop, Timothy D TD; Iles, Mark M MM; Maqbool, Azhar A; Yuldasheva, Nadira N; Hall, Alistair S AS; Braund, Peter S PS; Dixon, Richard J RJ; Mangino, Massimo M; Stevens, Suzanne S; Thompson, John R JR; Bredin, Francesca F; Tremelling, Mark M; Parkes, Miles M; Drummond, Hazel H; Lees, Charles W CW; Nimmo, Elaine R ER; Satsangi, Jack J; Fisher, Sheila A SA; Forbes, Alastair A; Lewis, Cathryn M CM; Onnie, Clive M CM; Prescott, Natalie J NJ; Sanderson, Jeremy J; Matthew, Christopher G CG; Barbour, Jamie J; Mohiuddin, M Khalid MK; Todhunter, Catherine E CE; Mansfield, John C JC; Ahmad, Tariq T; Cummings, Fraser R FR; Jewell, Derek P DP; Webster, John J; Brown, Morris J MJ; Lathrop, Mark G MG; Connell, John J; Dominiczak, Anna A; Marcano, Carolina A Braga CA; Burke, Beverley B; Dobson, Richard R; Gungadoo, Johannie J; Lee, Kate L KL; Munroe, Patricia B PB; Newhouse, Stephen J SJ; Onipinla, Abiodun A; Wallace, Chris C; Xue, Mingzhan M; Caulfield, Mark M; Farrall, Martin M; Barton, Anne A; , ; Bruce, Ian N IN; Donovan, Hannah H; Eyre, Steve S; Gilbert, Paul D PD; Hilder, Samantha L SL; Hinks, Anne M AM; John, Sally L SL; Potter, Catherine C; Silman, Alan J AJ; Symmons, Deborah P M DP; Thomson, Wendy W; Worthington, Jane J; Dunger, David B DB; Widmer, Barry B; Frayling, Timothy M TM; Freathy, Rachel M RM; Lango, Hana H; Perry, John R B JR; Shields, Beverley M BM; Weedon, Michael N MN; Hattersley, Andrew T AT; Hitman, Graham A GA; Walker, Mark M; Elliott, Kate S KS; Groves, Christopher J CJ; Lindgren, Cecilia M CM; Rayner, Nigel W NW; Timpson, Nicolas J NJ; Zeggini, Eleftheria E; Newport, Melanie M; Sirugo, Giorgio G; Lyons, Emily E; Vannberg, Fredrik F; Hill, Adrian V S AV; Bradbury, Linda A LA; Farrar, Claire C; Pointon, Jennifer J JJ; Wordsworth, Paul P; Brown, Matthew A MA; Franklyn, Jayne A JA; Heward, Joanne M JM; Simmonds, Matthew J MJ; Gough, Stephen C L SC; Seal, Sheila S; , ; Stratton, Michael R MR; Rahman, Nazneen N; Ban, Maria M; Goris, An A; Sawcer, Stephen J SJ; Compston, Alastair A; Conway, David D; Jallow, Muminatou M; Newport, Melanie M; Sirugo, Giorgio G; Rockett, Kirk A KA; Bumpstead, Suzannah J SJ; Chaney, Amy A; Downes, Kate K; Ghori, Mohammed J R MJ; Gwilliam, Rhian R; Hunt, Sarah E SE; Inouye, Michael M; Keniry, Andrew A; King, Emma E; McGinnis, Ralph R; Potter, Simon S; Ravindrarajah, Rathi R; Whittaker, Pamela P; Widden, Claire C; Withers, David D; Cardin, Niall J NJ; Davison, Dan D; Ferreira, Teresa T; Pereira-Gale, Joanne J; Hallgrimsdo'ttir, Ingeleif B IB; Howie, Bryan N BN; Su, Zhan Z; Teo, Yik Ying YY; Vukcevic, Damjan D; Bentley, David D; Brown, Matthew A MA; Compston, Alastair A; Farrall, Martin M; Hall, Alistair S AS; Hattersley, Andrew T AT; Hill, Adrian V S AV; Parkes, Miles M; Pembrey, Marcus M; Stratton, Michael R MR; Mitchell, Sarah L SL; Newby, Paul R PR; Brand, Oliver J OJ; Carr-Smith, Jackie J; Pearce, Simon H S SH; McGinnis, R R; Keniry, A A; Deloukas, P P; Reveille, John D JD; Zhou, Xiaodong X; Sims, Anne-Marie AM; Dowling, Alison A; Taylor, Jacqueline J; Doan, Tracy T; Davis, John C JC; Savage, Laurie L; Ward, Michael M MM; Learch, Thomas L TL; Weisman, Michael H MH; Brown, Mathew M