Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 39C>A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: Ser13Ser

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

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JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states.

Cancer Research

Stevens, Laura E LE; Peluffo, Guillermo G; Qiu, Xintao X; Temko, Daniel D; Fassl, Anne A; Li, Zheqi Z; Trinh, Anne A; Seehawer, Marco M; Jovanovic, Bojana B; Aleckovic, Masa M; Wilde, Callahan M CM; Geck, Renee C RC; Shu, Shaokun S; Kingston, Natalie L NL; Harper, Nicholas W NW; Almendro, Vanessa V; Pyke, Alanna L AL; Egri, Shawn B SB; Papanastasiou, Malvina M; Clement, Kendell K; Zhou, Ningxuan N; Walker, Sarah S; Salas, Jacqueline J; Park, So Yeon SY; Frank, David A DA; Meissner, Alexander A; Jaffe, Jacob D JD; Sicinski, Piotr P; Toker, Alex A; Michor, Franziska F; Long, Henry W HW; Overmoyer, Beth A BA; Polyak, Kornelia K

Publication Date: 2022-11-21

Variant appearance in text: TG: S13S

PubMed Link: 36409824

Variant Present in the following documents:

• can-22-0423_supplementary_table_s3_suppst3.xlsx, sheet 1

View BVdb publication page

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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: TG: S13S

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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LDLR dysfunction induces LDL accumulation and promotes pulmonary fibrosis.

Clinical And Translational Medicine

Shi, Xiangguang X; Chen, Yahui Y; Liu, Qingmei Q; Mei, Xueqian X; Liu, Jing J; Tang, Yulong Y; Luo, Ruoyu R; Sun, Dayan D; Ma, Yanyun Y; Wu, Wenyu W; Tu, Wenzhen W; Zhao, Yinhuan Y; Xu, Weihong W; Ke, Yuehai Y; Jiang, Shuai S; Huang, Yan Y; Zhang, Rui R; Wang, Lei L; Chen, Yuanyuan Y; Xia, Jingjing J; Pu, Weilin W; Zhu, Honglin H; Zuo, Xiaoxia X; Li, Yisha Y; Xu, Jinhua J; Gao, Fei F; Wei, Dong D; Chen, Jingyu J; Yin, Wenguang W; Wang, Qingwen Q; Dai, Huaping H; Yang, Libing L; Guo, Gang G; Cui, Jimin J; Song, Nana N; Zou, Hejian H; Zhao, Shimin S; Distler, Jörg H W JHW; Jin, Li L; Wang, Jiucun J

Publication Date: 2022-01

Variant appearance in text: TG: S13S

PubMed Link: 35083881

Variant Present in the following documents:

• Main text
• CTM2-12-e711.pdf

View BVdb publication page

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LDLR dysfunction induces LDL accumulation and promotes pulmonary fibrosis.

Clinical And Translational Medicine

Shi, Xiangguang X; Chen, Yahui Y; Liu, Qingmei Q; Mei, Xueqian X; Liu, Jing J; Tang, Yulong Y; Luo, Ruoyu R; Sun, Dayan D; Ma, Yanyun Y; Wu, Wenyu W; Tu, Wenzhen W; Zhao, Yinhuan Y; Xu, Weihong W; Ke, Yuehai Y; Jiang, Shuai S; Huang, Yan Y; Zhang, Rui R; Wang, Lei L; Chen, Yuanyuan Y; Xia, Jingjing J; Pu, Weilin W; Zhu, Honglin H; Zuo, Xiaoxia X; Li, Yisha Y; Xu, Jinhua J; Gao, Fei F; Wei, Dong D; Chen, Jingyu J; Yin, Wenguang W; Wang, Qingwen Q; Dai, Huaping H; Yang, Libing L; Guo, Gang G; Cui, Jimin J; Song, Nana N; Zou, Hejian H; Zhao, Shimin S; Distler, Jörg H W JHW; Jin, Li L; Wang, Jiucun J

Publication Date: 2022-01

Variant appearance in text: TG: S13S

PubMed Link: 35083881

Variant Present in the following documents:

• Main text
• CTM2-12-e711.pdf

View BVdb publication page

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Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.

Journal Of Translational Medicine

Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M

Publication Date: 2020-12-30

Variant appearance in text: TG: S13S

PubMed Link: 33380328

Variant Present in the following documents:

• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 2
• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: TG: Ser13Ser

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

View BVdb publication page

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Recent Progress on Chemical Constituents and Pharmacological Effects of the Genus Nigella.

Evidence-Based Complementary And Alternative Medicine : Ecam

Niu, Yun Y; Zhou, Li L; Meng, Lijun L; Chen, Sitan S; Ma, Changyang C; Liu, Zhenhua Z; Kang, Wenyi W

Publication Date: 2020

Variant appearance in text: TG: S13=

PubMed Link: 32655665

Variant Present in the following documents:

• ECAM2020-6756835.pdf

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Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq.

Bmc Genomics

Tan, Cong C; Zhang, Xiao-Qi XQ; Wang, Yin Y; Wu, Dianxin D; Bellgard, Matthew I MI; Xu, Yanhao Y; Shu, Xiaoli X; Zhou, Gaofeng G; Li, Chengdao C

Publication Date: 2019-10-29

Variant appearance in text: TG: Ser13Ser

PubMed Link: 31664908

Variant Present in the following documents:

• 12864_2019_6182_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Association of a disintegrin and metalloproteinase with a thrombospondin type 1 motif member 13 polymorphisms with severity of coronary stenosis in type 2 diabetes mellitus.

Journal Of Research In Medical Sciences : The Official Journal Of Isfahan University Of Medical Sciences

Lasom, Supakanya S; Komanasin, Nantarat N; Settasatian, Nongnuch N; Settasatian, Chatri C; Kukongviriyapan, Upa U; Intharapetch, Pongsak P

Publication Date: 2018

Variant appearance in text: TG: S13=

PubMed Link: 30181741

Variant Present in the following documents:

• JRMS-23-59.pdf

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Overexpression of p54nrb/NONO induces differential EPHA6 splicing and contributes to castration-resistant prostate cancer growth.

Oncotarget

Yamamoto, Ryuji R; Osawa, Tsuyoshi T; Sasaki, Yusuke Y; Yamamoto, Shogo S; Anai, Motonobu M; Izumi, Kouji K; Matsumura, Yoshihiro Y; Sakai, Juro J; Aburatani, Hiroyuki H; Mizokami, Atsushi A; Kodama, Tatsuhiko T; Tanaka, Toshiya T

Publication Date: 2018-02-13

Variant appearance in text: TG: S13S

PubMed Link: 29535823

Variant Present in the following documents:

• oncotarget-09-10510-s021.xlsx, sheet 1

View BVdb publication page

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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.

Oncotarget

Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K

Publication Date: 2017-11-21

Variant appearance in text: TG: 39C>A; S13R

PubMed Link: 29245897

Variant Present in the following documents:

• oncotarget-08-99237-s003.xlsx, sheet 1

View BVdb publication page

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Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: TG: 39C>A

PubMed Link: 28231761

Variant Present in the following documents:

• 12864_2017_3524_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: TG: Ser13Ser

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins.

Nature Communications

Carmi, Shai S; Hui, Ken Y KY; Kochav, Ethan E; Liu, Xinmin X; Xue, James J; Grady, Fillan F; Guha, Saurav S; Upadhyay, Kinnari K; Ben-Avraham, Dan D; Mukherjee, Semanti S; Bowen, B Monica BM; Thomas, Tinu T; Vijai, Joseph J; Cruts, Marc M; Froyen, Guy G; Lambrechts, Diether D; Plaisance, Stéphane S; Van Broeckhoven, Christine C; Van Damme, Philip P; Van Marck, Herwig H; Barzilai, Nir N; Darvasi, Ariel A; Offit, Kenneth K; Bressman, Susan S; Ozelius, Laurie J LJ; Peter, Inga I; Cho, Judy H JH; Ostrer, Harry H; Atzmon, Gil G; Clark, Lorraine N LN; Lencz, Todd T; Pe'er, Itsik I

Publication Date: 2014-09-09

Variant appearance in text: TG: S13S

PubMed Link: 25203624

Variant Present in the following documents:

• ncomms5835-s5.xlsx, sheet 4

View BVdb publication page

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A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: TG: S13S

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

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Identification of 2127 new HLA class I alleles in potential stem cell donors from Germany, the United States and Poland.

Tissue Antigens

Hernández-Frederick, C J CJ; Giani, A S AS; Cereb, N N; Sauter, J J; Silva-González, R R; Pingel, J J; Schmidt, A H AH; Ehninger, G G; Yang, S Y SY

Publication Date: 2014-03

Variant appearance in text: TG: S13S

PubMed Link: 24571476

Variant Present in the following documents:

• Main text

View BVdb publication page

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