Publications:

---

HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 39C>T

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

---

Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: 39C>T

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

View BVdb publication page

---

JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states.

Cancer Research

Stevens, Laura E LE; Peluffo, Guillermo G; Qiu, Xintao X; Temko, Daniel D; Fassl, Anne A; Li, Zheqi Z; Trinh, Anne A; Seehawer, Marco M; Jovanovic, Bojana B; Aleckovic, Masa M; Wilde, Callahan M CM; Geck, Renee C RC; Shu, Shaokun S; Kingston, Natalie L NL; Harper, Nicholas W NW; Almendro, Vanessa V; Pyke, Alanna L AL; Egri, Shawn B SB; Papanastasiou, Malvina M; Clement, Kendell K; Zhou, Ningxuan N; Walker, Sarah S; Salas, Jacqueline J; Park, So Yeon SY; Frank, David A DA; Meissner, Alexander A; Jaffe, Jacob D JD; Sicinski, Piotr P; Toker, Alex A; Michor, Franziska F; Long, Henry W HW; Overmoyer, Beth A BA; Polyak, Kornelia K

Publication Date: 2022-11-21

Variant appearance in text: TG: S13S

PubMed Link: 36409824

Variant Present in the following documents:

• can-22-0423_supplementary_table_s3_suppst3.xlsx, sheet 1

View BVdb publication page

---

Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: TG: S13S

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

---

LDLR dysfunction induces LDL accumulation and promotes pulmonary fibrosis.

Clinical And Translational Medicine

Shi, Xiangguang X; Chen, Yahui Y; Liu, Qingmei Q; Mei, Xueqian X; Liu, Jing J; Tang, Yulong Y; Luo, Ruoyu R; Sun, Dayan D; Ma, Yanyun Y; Wu, Wenyu W; Tu, Wenzhen W; Zhao, Yinhuan Y; Xu, Weihong W; Ke, Yuehai Y; Jiang, Shuai S; Huang, Yan Y; Zhang, Rui R; Wang, Lei L; Chen, Yuanyuan Y; Xia, Jingjing J; Pu, Weilin W; Zhu, Honglin H; Zuo, Xiaoxia X; Li, Yisha Y; Xu, Jinhua J; Gao, Fei F; Wei, Dong D; Chen, Jingyu J; Yin, Wenguang W; Wang, Qingwen Q; Dai, Huaping H; Yang, Libing L; Guo, Gang G; Cui, Jimin J; Song, Nana N; Zou, Hejian H; Zhao, Shimin S; Distler, Jörg H W JHW; Jin, Li L; Wang, Jiucun J

Publication Date: 2022-01

Variant appearance in text: TG: S13S

PubMed Link: 35083881

Variant Present in the following documents:

• Main text
• CTM2-12-e711.pdf

View BVdb publication page

---

LDLR dysfunction induces LDL accumulation and promotes pulmonary fibrosis.

Clinical And Translational Medicine

Shi, Xiangguang X; Chen, Yahui Y; Liu, Qingmei Q; Mei, Xueqian X; Liu, Jing J; Tang, Yulong Y; Luo, Ruoyu R; Sun, Dayan D; Ma, Yanyun Y; Wu, Wenyu W; Tu, Wenzhen W; Zhao, Yinhuan Y; Xu, Weihong W; Ke, Yuehai Y; Jiang, Shuai S; Huang, Yan Y; Zhang, Rui R; Wang, Lei L; Chen, Yuanyuan Y; Xia, Jingjing J; Pu, Weilin W; Zhu, Honglin H; Zuo, Xiaoxia X; Li, Yisha Y; Xu, Jinhua J; Gao, Fei F; Wei, Dong D; Chen, Jingyu J; Yin, Wenguang W; Wang, Qingwen Q; Dai, Huaping H; Yang, Libing L; Guo, Gang G; Cui, Jimin J; Song, Nana N; Zou, Hejian H; Zhao, Shimin S; Distler, Jörg H W JHW; Jin, Li L; Wang, Jiucun J

Publication Date: 2022-01

Variant appearance in text: TG: S13S

PubMed Link: 35083881

Variant Present in the following documents:

• Main text
• CTM2-12-e711.pdf

View BVdb publication page

---

Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: TG: 39C>T

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.

Journal Of Translational Medicine

Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M

Publication Date: 2020-12-30

Variant appearance in text: TG: S13S

PubMed Link: 33380328

Variant Present in the following documents:

• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 2
• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Integrated molecular drivers coordinate biological and clinical states in melanoma.

Nature Genetics

Conway, Jake R JR; Dietlein, Felix F; Taylor-Weiner, Amaro A; AlDubayan, Saud S; Vokes, Natalie N; Keenan, Tanya T; Reardon, Brendan B; He, Meng Xiao MX; Margolis, Claire A CA; Weirather, Jason L JL; Haq, Rizwan R; Schilling, Bastian B; Stephen Hodi, F F; Schadendorf, Dirk D; Liu, David D; Van Allen, Eliezer M EM

Publication Date: 2020-12

Variant appearance in text: TG: 39C>T

PubMed Link: 33230298

Variant Present in the following documents:

• NIHMS1637640-supplement-SuppData1.xlsx, sheet 1

View BVdb publication page

---

K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: TG: 39C>T

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

View BVdb publication page

---

Recent Progress on Chemical Constituents and Pharmacological Effects of the Genus Nigella.

Evidence-Based Complementary And Alternative Medicine : Ecam

Niu, Yun Y; Zhou, Li L; Meng, Lijun L; Chen, Sitan S; Ma, Changyang C; Liu, Zhenhua Z; Kang, Wenyi W

Publication Date: 2020

Variant appearance in text: TG: S13=

PubMed Link: 32655665

Variant Present in the following documents:

• ECAM2020-6756835.pdf

View BVdb publication page

---

Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq.

Bmc Genomics

Tan, Cong C; Zhang, Xiao-Qi XQ; Wang, Yin Y; Wu, Dianxin D; Bellgard, Matthew I MI; Xu, Yanhao Y; Shu, Xiaoli X; Zhou, Gaofeng G; Li, Chengdao C

Publication Date: 2019-10-29

Variant appearance in text: TG: Ser13Ser

PubMed Link: 31664908

Variant Present in the following documents:

• 12864_2019_6182_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

A pan-cancer analysis of synonymous mutations.

Nature Communications

Sharma, Yogita Y; Miladi, Milad M; Dukare, Sandeep S; Boulay, Karine K; Caudron-Herger, Maiwen M; Groß, Matthias M; Backofen, Rolf R; Diederichs, Sven S

Publication Date: 2019-06-12

Variant appearance in text: TG: 39C>T

PubMed Link: 31189880

Variant Present in the following documents:

• 41467_2019_10489_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: TG: 39C>T

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Need for high-resolution Genetic Analysis in iPSC: Results and Lessons from the ForIPS Consortium.

Scientific Reports

Popp, Bernt B; Krumbiegel, Mandy M; Grosch, Janina J; Sommer, Annika A; Uebe, Steffen S; Kohl, Zacharias Z; Plötz, Sonja S; Farrell, Michaela M; Trautmann, Udo U; Kraus, Cornelia C; Ekici, Arif B AB; Asadollahi, Reza R; Regensburger, Martin M; Günther, Katharina K; Rauch, Anita A; Edenhofer, Frank F; Winkler, Jürgen J; Winner, Beate B; Reis, André A

Publication Date: 2018-11-21

Variant appearance in text: TG: 39C>T

PubMed Link: 30464253

Variant Present in the following documents:

• 41598_2018_35506_MOESM5_ESM.xlsx, sheet 4

View BVdb publication page

---

Association of a disintegrin and metalloproteinase with a thrombospondin type 1 motif member 13 polymorphisms with severity of coronary stenosis in type 2 diabetes mellitus.

Journal Of Research In Medical Sciences : The Official Journal Of Isfahan University Of Medical Sciences

Lasom, Supakanya S; Komanasin, Nantarat N; Settasatian, Nongnuch N; Settasatian, Chatri C; Kukongviriyapan, Upa U; Intharapetch, Pongsak P

Publication Date: 2018

Variant appearance in text: TG: S13=

PubMed Link: 30181741

Variant Present in the following documents:

• JRMS-23-59.pdf

View BVdb publication page

---

Loss of Dnmt3a Immortalizes Hematopoietic Stem Cells In Vivo.

Cell Reports

Jeong, Mira M; Park, Hyun Jung HJ; Celik, Hamza H; Ostrander, Elizabeth L EL; Reyes, Jaime M JM; Guzman, Anna A; Rodriguez, Benjamin B; Lei, Yong Y; Lee, Yeojin Y; Ding, Lei L; Guryanova, Olga A OA; Li, Wei W; Goodell, Margaret A MA; Challen, Grant A GA

Publication Date: 2018-04-03

Variant appearance in text: TG: 39C>T

PubMed Link: 29617651

Variant Present in the following documents:

• NIHMS958971-supplement-5.xlsx, sheet 3
• NIHMS958971-supplement-5.xlsx, sheet 2
• NIHMS958971-supplement-5.xlsx, sheet 1

View BVdb publication page

---

Overexpression of p54nrb/NONO induces differential EPHA6 splicing and contributes to castration-resistant prostate cancer growth.

Oncotarget

Yamamoto, Ryuji R; Osawa, Tsuyoshi T; Sasaki, Yusuke Y; Yamamoto, Shogo S; Anai, Motonobu M; Izumi, Kouji K; Matsumura, Yoshihiro Y; Sakai, Juro J; Aburatani, Hiroyuki H; Mizokami, Atsushi A; Kodama, Tatsuhiko T; Tanaka, Toshiya T

Publication Date: 2018-02-13

Variant appearance in text: TG: S13S

PubMed Link: 29535823

Variant Present in the following documents:

• oncotarget-09-10510-s021.xlsx, sheet 1

View BVdb publication page

---

Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: TG: 39C>T

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

View BVdb publication page

---

Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: TG: 39C>T

PubMed Link: 28231761

Variant Present in the following documents:

• 12864_2017_3524_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

---

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: TG: 39C>T

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins.

Nature Communications

Carmi, Shai S; Hui, Ken Y KY; Kochav, Ethan E; Liu, Xinmin X; Xue, James J; Grady, Fillan F; Guha, Saurav S; Upadhyay, Kinnari K; Ben-Avraham, Dan D; Mukherjee, Semanti S; Bowen, B Monica BM; Thomas, Tinu T; Vijai, Joseph J; Cruts, Marc M; Froyen, Guy G; Lambrechts, Diether D; Plaisance, Stéphane S; Van Broeckhoven, Christine C; Van Damme, Philip P; Van Marck, Herwig H; Barzilai, Nir N; Darvasi, Ariel A; Offit, Kenneth K; Bressman, Susan S; Ozelius, Laurie J LJ; Peter, Inga I; Cho, Judy H JH; Ostrer, Harry H; Atzmon, Gil G; Clark, Lorraine N LN; Lencz, Todd T; Pe'er, Itsik I

Publication Date: 2014-09-09

Variant appearance in text: TG: S13S

PubMed Link: 25203624

Variant Present in the following documents:

• ncomms5835-s5.xlsx, sheet 4

View BVdb publication page

---

A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: TG: S13S

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

---

Identification of 2127 new HLA class I alleles in potential stem cell donors from Germany, the United States and Poland.

Tissue Antigens

Hernández-Frederick, C J CJ; Giani, A S AS; Cereb, N N; Sauter, J J; Silva-González, R R; Pingel, J J; Schmidt, A H AH; Ehninger, G G; Yang, S Y SY

Publication Date: 2014-03

Variant appearance in text: TG: S13S

PubMed Link: 24571476

Variant Present in the following documents:

• Main text

View BVdb publication page

---