MC38 colorectal tumor cell lines from two different sources display substantial differences in transcriptome, mutanome and neoantigen expression.
Frontiers In Immunology
Schrörs, Barbara B; Hos, Brett J BJ; Yildiz, Ikra G IG; Löwer, Martin M; Lang, Franziska F; Holtsträter, Christoph C; Becker, Julia J; Vormehr, Mathias M; Sahin, Ugur U; Ossendorp, Ferry F; Diken, Mustafa M
Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
Communications Biology
Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M
Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.
Nature Genetics
Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK
Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma.
The Journal Of Clinical Investigation
Lee, Patrick C PC; Klaeger, Susan S; Le, Phuong M PM; Korthauer, Keegan K; Cheng, Jingwei J; Ananthapadmanabhan, Varsha V; Frost, Thomas C TC; Stevens, Jonathan D JD; Wong, Alan Yl AY; Iorgulescu, J Bryan JB; Tarren, Anna Y AY; Chea, Vipheaviny A VA; Carulli, Isabel P IP; Lemvigh, Camilla K CK; Pedersen, Christina B CB; Gartin, Ashley K AK; Sarkizova, Siranush S; Wright, Kyle T KT; Li, Letitia W LW; Nomburg, Jason J; Li, Shuqiang S; Huang, Teddy T; Liu, Xiaoxi X; Pomerance, Lucas L; Doherty, Laura M LM; Apffel, Annie M AM; Wallace, Luke J LJ; Rachimi, Suzanna S; Felt, Kristen D KD; Wolff, Jacquelyn O JO; Witten, Elizabeth E; Zhang, Wandi W; Neuberg, Donna D; Lane, William J WJ; Zhang, Guanglan G; Olsen, Lars R LR; Thakuria, Manisha M; Rodig, Scott J SJ; Clauser, Karl R KR; Starrett, Gabriel J GJ; Doench, John G JG; Buhrlage, Sara J SJ; Carr, Steven A SA; DeCaprio, James A JA; Wu, Catherine J CJ; Keskin, Derin B DB
Author Correction: GWAS of thyroid stimulating hormone highlights the pleiotropic effects and inverse association with thyroid cancer.
Nature Communications
Zhou, Wei W; Brumpton, Ben B; Kabil, Omer O; Gudmundsson, Julius J; Thorleifsson, Gudmar G; Weinstock, Josh J; Zawistowski, Matthew M; Nielsen, Jonas B JB; Chaker, Layal L; Medici, Marco M; Teumer, Alexander A; Naitza, Silvia S; Sanna, Serena S; Schultheiss, Ulla T UT; Cappola, Anne A; Karjalainen, Juha J; Kurki, Mitja M; Oneka, Morgan M; Taylor, Peter P; Fritsche, Lars G LG; Graham, Sarah E SE; Wolford, Brooke N BN; Overton, William W; Rasheed, Humaira H; Haug, Eirin B EB; Gabrielsen, Maiken E ME; Skogholt, Anne Heidi AH; Surakka, Ida I; Davey Smith, George G; Pandit, Anita A; Roychowdhury, Tanmoy T; Hornsby, Whitney E WE; Jonasson, Jon G JG; Senter, Leigha L; Liyanarachchi, Sandya S; Ringel, Matthew D MD; Xu, Li L; Kiemeney, Lambertus A LA; He, Huiling H; Netea-Maier, Romana T RT; Mayordomo, Jose I JI; Plantinga, Theo S TS; Hrafnkelsson, Jon J; Hjartarson, Hannes H; Sturgis, Erich M EM; Palotie, Aarno A; Daly, Mark M; Citterio, Cintia E CE; Arvan, Peter P; Brummett, Chad M CM; Boehnke, Michael M; de la Chapelle, Albert A; Stefansson, Kari K; Hveem, Kristian K; Willer, Cristen J CJ; Åsvold, Bjørn Olav BO
CD47 interactions with exportin-1 limit the targeting of m7G-modified RNAs to extracellular vesicles.
Journal Of Cell Communication And Signaling
Kaur, Sukhbir S; Saldana, Alejandra Cavazos AC; Elkahloun, Abdel G AG; Petersen, Jennifer D JD; Arakelyan, Anush A; Singh, Satya P SP; Jenkins, Lisa M LM; Kuo, Bethany B; Reginauld, Bianca B; Jordan, David G DG; Tran, Andy D AD; Wu, Weiwei W; Zimmerberg, Joshua J; Margolis, Leonid L; Roberts, David D DD
Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.
Journal Of Translational Medicine
Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M
Integrated molecular drivers coordinate biological and clinical states in melanoma.
Nature Genetics
Conway, Jake R JR; Dietlein, Felix F; Taylor-Weiner, Amaro A; AlDubayan, Saud S; Vokes, Natalie N; Keenan, Tanya T; Reardon, Brendan B; He, Meng Xiao MX; Margolis, Claire A CA; Weirather, Jason L JL; Haq, Rizwan R; Schilling, Bastian B; Stephen Hodi, F F; Schadendorf, Dirk D; Liu, David D; Van Allen, Eliezer M EM
GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.
Nature Communications
Zhou, Wei W; Brumpton, Ben B; Kabil, Omer O; Gudmundsson, Julius J; Thorleifsson, Gudmar G; Weinstock, Josh J; Zawistowski, Matthew M; Nielsen, Jonas B JB; Chaker, Layal L; Medici, Marco M; Teumer, Alexander A; Naitza, Silvia S; Sanna, Serena S; Schultheiss, Ulla T UT; Cappola, Anne A; Karjalainen, Juha J; Kurki, Mitja M; Oneka, Morgan M; Taylor, Peter P; Fritsche, Lars G LG; Graham, Sarah E SE; Wolford, Brooke N BN; Overton, William W; Rasheed, Humaira H; Haug, Eirin B EB; Gabrielsen, Maiken E ME; Skogholt, Anne Heidi AH; Surakka, Ida I; Davey Smith, George G; Pandit, Anita A; Roychowdhury, Tanmoy T; Hornsby, Whitney E WE; Jonasson, Jon G JG; Senter, Leigha L; Liyanarachchi, Sandya S; Ringel, Matthew D MD; Xu, Li L; Kiemeney, Lambertus A LA; He, Huiling H; Netea-Maier, Romana T RT; Mayordomo, Jose I JI; Plantinga, Theo S TS; Hrafnkelsson, Jon J; Hjartarson, Hannes H; Sturgis, Erich M EM; Palotie, Aarno A; Daly, Mark M; Citterio, Cintia E CE; Arvan, Peter P; Brummett, Chad M CM; Boehnke, Michael M; de la Chapelle, Albert A; Stefansson, Kari K; Hveem, Kristian K; Willer, Cristen J CJ; Åsvold, Bjørn Olav BO
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
appreci8: a pipeline for precise variant calling integrating 8 tools.
Bioinformatics (Oxford, England)
Sandmann, Sarah S; Karimi, Mohsen M; de Graaf, Aniek O AO; Rohde, Christian C; Göllner, Stefanie S; Varghese, Julian J; Ernsting, Jan J; Walldin, Gunilla G; van der Reijden, Bert A BA; Müller-Tidow, Carsten C; Malcovati, Luca L; Hellström-Lindberg, Eva E; Jansen, Joop H JH; Dugas, Martin M
Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.
Oncotarget
Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K
Cornelius, Albert A; Foley, Jessica J; Bond, Jeffrey J; Nagulapally, Abhinav B AB; Steinbrecher, Julie J; Hendricks, William P D WPD; Rich, Maria M; Yendrembam, Sangeeta S; Bergendahl, Genevieve G; Trent, Jeffrey M JM; Sholler, Giselle S GS
Increased burden of ultra-rare protein-altering variants among 4,877 individuals with schizophrenia.
Nature Neuroscience
Genovese, Giulio G; Fromer, Menachem M; Stahl, Eli A EA; Ruderfer, Douglas M DM; Chambert, Kimberly K; Landén, Mikael M; Moran, Jennifer L JL; Purcell, Shaun M SM; Sklar, Pamela P; Sullivan, Patrick F PF; Hultman, Christina M CM; McCarroll, Steven A SA
The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine.
Genome Medicine
Garofalo, Andrea A; Sholl, Lynette L; Reardon, Brendan B; Taylor-Weiner, Amaro A; Amin-Mansour, Ali A; Miao, Diana D; Liu, David D; Oliver, Nelly N; MacConaill, Laura L; Ducar, Matthew M; Rojas-Rudilla, Vanesa V; Giannakis, Marios M; Ghazani, Arezou A; Gray, Stacy S; Janne, Pasi P; Garber, Judy J; Joffe, Steve S; Lindeman, Neal N; Wagle, Nikhil N; Garraway, Levi A LA; Van Allen, Eliezer M EM
Publication Date: 2016-07-26
Variant appearance in text: TG: 199G>A; G67S; rs116340633
A Landscape of Pharmacogenomic Interactions in Cancer.
Cell
Iorio, Francesco F; Knijnenburg, Theo A TA; Vis, Daniel J DJ; Bignell, Graham R GR; Menden, Michael P MP; Schubert, Michael M; Aben, Nanne N; Gonçalves, Emanuel E; Barthorpe, Syd S; Lightfoot, Howard H; Cokelaer, Thomas T; Greninger, Patricia P; van Dyk, Ewald E; Chang, Han H; de Silva, Heshani H; Heyn, Holger H; Deng, Xianming X; Egan, Regina K RK; Liu, Qingsong Q; Mironenko, Tatiana T; Mitropoulos, Xeni X; Richardson, Laura L; Wang, Jinhua J; Zhang, Tinghu T; Moran, Sebastian S; Sayols, Sergi S; Soleimani, Maryam M; Tamborero, David D; Lopez-Bigas, Nuria N; Ross-Macdonald, Petra P; Esteller, Manel M; Gray, Nathanael S NS; Haber, Daniel A DA; Stratton, Michael R MR; Benes, Cyril H CH; Wessels, Lodewyk F A LFA; Saez-Rodriguez, Julio J; McDermott, Ultan U; Garnett, Mathew J MJ