Publications:

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Dynamics of age- versus therapy-related clonal hematopoiesis in long-term survivors of pediatric cancer.

Cancer Discovery

Hagiwara, Kohei K; Natarajan, Sivaraman S; Wang, Zhaoming Z; Zubair, Haseeb H; Mulder, Heather L HL; Dong, Li L; Plyler, Emily M EM; Thimmaiah, Padma P; Ma, Xiaotu X; Ness, Kirsten K KK; Li, Zhenghong Z; Mulrooney, Daniel A DA; Wilson, Carmen L CL; Yasui, Yutaka Y; Hudson, Melissa M MM; Easton, John J; Robison, Leslie L LL; Zhang, Jinghui J

Publication Date: 2023-02-08

Variant appearance in text: TP53: S185R

PubMed Link: 36751942

Variant Present in the following documents:

• cd-22-0956_tables_s2_s7_s8_s9_suppst1.xlsx, sheet 4

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CTCF DNA-binding domain undergoes dynamic and selective protein-protein interactions.

Iscience

Zhou, Rong R; Tian, Kai K; Huang, Jie J; Duan, Wenjia W; Fu, Hongye H; Feng, Ying Y; Wang, Hui H; Jiang, Yongpeng Y; Li, Yuanjun Y; Wang, Rui R; Hu, Jiazhi J; Ma, Hanhui H; Qi, Zhi Z; Ji, Xiong X

Publication Date: 2022-09-16

Variant appearance in text: p53: 555C>G

PubMed Link: 36117989

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

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Integrated cohort of esophageal squamous cell cancer reveals genomic features underlying clinical characteristics.

Nature Communications

Li, Minghao M; Zhang, Zicheng Z; Wang, Qianrong Q; Yi, Yan Y; Li, Baosheng B

Publication Date: 2022-09-07

Variant appearance in text: TP53: S185R

PubMed Link: 36071046

Variant Present in the following documents:

• 41467_2022_32962_MOESM15_ESM.xlsx, sheet 22

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Finding driver mutations in cancer: Elucidating the role of background mutational processes.

Plos Computational Biology

Brown, Anna-Leigh AL; Li, Minghui M; Goncearenco, Alexander A; Panchenko, Anna R AR

Publication Date: 2019-04

Variant appearance in text: TP53: S185R

PubMed Link: 31034466

Variant Present in the following documents:

• pcbi.1006981.s010.xlsx, sheet 1

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NetSig: network-based discovery from cancer genomes.

Nature Methods

Horn, Heiko H; Lawrence, Michael S MS; Chouinard, Candace R CR; Shrestha, Yashaswi Y; Hu, Jessica Xin JX; Worstell, Elizabeth E; Shea, Emily E; Ilic, Nina N; Kim, Eejung E; Kamburov, Atanas A; Kashani, Alireza A; Hahn, William C WC; Campbell, Joshua D JD; Boehm, Jesse S JS; Getz, Gad G; Lage, Kasper K

Publication Date: 2018-01

Variant appearance in text: TP53: S185R

PubMed Link: 29200198

Variant Present in the following documents:

• NIHMS918089-supplement-ST5.xlsx, sheet 1

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BCL9L Dysfunction Impairs Caspase-2 Expression Permitting Aneuploidy Tolerance in Colorectal Cancer.

Cancer Cell

López-García, Carlos C; Sansregret, Laurent L; Domingo, Enric E; McGranahan, Nicholas N; Hobor, Sebastijan S; Birkbak, Nicolai Juul NJ; Horswell, Stuart S; Grönroos, Eva E; Favero, Francesco F; Rowan, Andrew J AJ; Matthews, Nicholas N; Begum, Sharmin S; Phillimore, Benjamin B; Burrell, Rebecca R; Oukrif, Dahmane D; Spencer-Dene, Bradley B; Kovac, Michal M; Stamp, Gordon G; Stewart, Aengus A; Danielsen, Havard H; Novelli, Marco M; Tomlinson, Ian I; Swanton, Charles C

Publication Date: 2017-01-09

Variant appearance in text: TP53: S185R

PubMed Link: 28073006

Variant Present in the following documents:

• mmc1.pdf
• mmc6.pdf

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Utility of different massive parallel sequencing platforms for mutation profiling in clinical samples and identification of pitfalls using FFPE tissue.

International Journal Of Molecular Medicine

Fassunke, Jana J; Haller, Florian F; Hebele, Simone S; Moskalev, Evgeny A EA; Penzel, Roland R; Pfarr, Nicole N; Merkelbach-Bruse, Sabine S; Endris, Volker V

Publication Date: 2015-11

Variant appearance in text: TP53: 555C>G; S185R

PubMed Link: 26352389

Variant Present in the following documents:

• Main text
• ijmm-36-05-1233.pdf

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GESPA: classifying nsSNPs to predict disease association.

Bmc Bioinformatics

Khurana, Jay K JK; Reeder, Jay E JE; Shrimpton, Antony E AE; Thakar, Juilee J

Publication Date: 2015-07-25

Variant appearance in text: TP53: S185R

PubMed Link: 26206375

Variant Present in the following documents:

• 12859_2015_673_MOESM1_ESM.xls, sheet 1

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Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations.

Genome Biology

Martelotto, Luciano G LG; Ng, Charlotte Ky CK; De Filippo, Maria R MR; Zhang, Yan Y; Piscuoglio, Salvatore S; Lim, Raymond S RS; Shen, Ronglai R; Norton, Larry L; Reis-Filho, Jorge S JS; Weigelt, Britta B

Publication Date: 2014-10-28

Variant appearance in text: TP53: S185R

PubMed Link: 25348012

Variant Present in the following documents:

• 13059_2014_484_MOESM2_ESM.xlsx, sheet 1

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Predicting the functional impact of protein mutations: application to cancer genomics.

Nucleic Acids Research

Reva, Boris B; Antipin, Yevgeniy Y; Sander, Chris C

Publication Date: 2011-09-01

Variant appearance in text: TP53: S185R

PubMed Link: 21727090

Variant Present in the following documents:

• supp_gkr407_Supplement2_Table_SM1_COSMIC_mutations.xls, sheet 1

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Epidemiology of doublet/multiplet mutations in lung cancers: evidence that a subset arises by chronocoordinate events.

Plos One

Chen, Zhenbin Z; Feng, Jinong J; Buzin, Carolyn H CH; Sommer, Steve S SS

Publication Date: 2008

Variant appearance in text: TP53: S185R

PubMed Link: 19005564

Variant Present in the following documents:

• pone.0003714.s004.xls, sheet 1
• pone.0003714.s009.xls, sheet 1

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