Publications:

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Global population structure of the Serratia marcescens complex and identification of hospital-adapted lineages in the complex.

Microbial Genomics

Ono, Tomoyuki T; Taniguchi, Itsuki I; Nakamura, Keiji K; Nagano, Debora Satie DS; Nishida, Ruriko R; Gotoh, Yasuhiro Y; Ogura, Yoshitoshi Y; Sato, Mitsuhiko P MP; Iguchi, Atsushi A; Murase, Kazunori K; Yoshimura, Dai D; Itoh, Takehiko T; Shima, Ayaka A; Dubois, Damien D; Oswald, Eric E; Shiose, Akira A; Gotoh, Naomasa N; Hayashi, Tetsuya T

Publication Date: 2022-03

Variant appearance in text: 225: Ser80Ile

PubMed Link: 35315751

Variant Present in the following documents:

• Main text
• mgen-8-0793.pdf

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Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs.

Nature Microbiology

Bengtsson, Rebecca J RJ; Simpkin, Adam J AJ; Pulford, Caisey V CV; Low, Ross R; Rasko, David A DA; Rigden, Daniel J DJ; Hall, Neil N; Barry, Eileen M EM; Tennant, Sharon M SM; Baker, Kate S KS

Publication Date: 2022-02

Variant appearance in text: 225: S80I

PubMed Link: 35102306

Variant Present in the following documents:

• 41564_2021_Article_1054.pdf

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: S80I

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 6

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: S80I

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 6

View BVdb publication page

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Prevalence of genotypic antimicrobial resistance in clinical Shiga toxin-producing Escherichia coli in Norway, 2018 to 2020.

Journal Of Medical Microbiology

Ramstad, Silje N SN; Brandal, Lin T LT; Taxt, Arne M AM; Wasteson, Yngvild Y; Bjørnholt, Jørgen V JV; Naseer, Umaer U

Publication Date: 2021-12

Variant appearance in text: 225: S80I

PubMed Link: 34870582

Variant Present in the following documents:

• Main text
• jmm-70-1454.pdf

View BVdb publication page

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Prevalence of genotypic antimicrobial resistance in clinical Shiga toxin-producing Escherichia coli in Norway, 2018 to 2020.

Journal Of Medical Microbiology

Ramstad, Silje N SN; Brandal, Lin T LT; Taxt, Arne M AM; Wasteson, Yngvild Y; Bjørnholt, Jørgen V JV; Naseer, Umaer U

Publication Date: 2021-12

Variant appearance in text: 225: S80I

PubMed Link: 34870582

Variant Present in the following documents:

• Main text
• jmm-70-1454.pdf

View BVdb publication page

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Predictable properties of fitness landscapes induced by adaptational tradeoffs.

Elife

Das, Suman G SG; Direito, Susana Ol SO; Waclaw, Bartlomiej B; Allen, Rosalind J RJ; Krug, Joachim J

Publication Date: 2020-05-19

Variant appearance in text: 225: S80I

PubMed Link: 32423531

Variant Present in the following documents:

• Main text

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Antimicrobial resistance monitoring of commensal Enterococcus faecalis in broiler breeders.

Poultry Science

Noh, Eun Bi EB; Kim, Yeong Bin YB; Seo, Kwang Won KW; Son, Se Hyun SH; Ha, Jong Su JS; Lee, Young Ju YJ

Publication Date: 2020-05

Variant appearance in text: 225: S80I

PubMed Link: 32359604

Variant Present in the following documents:

• main.pdf

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A vaccine-based nanosystem for initiating innate immunity and improving tumor immunotherapy.

Nature Communications

Zheng, Di-Wei DW; Gao, Fan F; Cheng, Qian Q; Bao, Peng P; Dong, Xue X; Fan, Jin-Xuan JX; Song, Wen W; Zeng, Xuan X; Cheng, Si-Xue SX; Zhang, Xian-Zheng XZ

Publication Date: 2020-04-24

Variant appearance in text: 225: S80I

PubMed Link: 32332752

Variant Present in the following documents:

• 41467_2020_15927_MOESM3_ESM.xlsx, sheet 1

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Genome Sequencing of an Escherichia coli Sequence Type 617 Strain Isolated from Beach Ghost Shrimp (Callichirus major) from a Heavily Polluted Ecosystem Reveals a Wider Resistome against Heavy Metals and Antibiotics.

Microbiology Resource Announcements

Monte, Daniel F DF; Sellera, Fábio P FP; Fernandes, Miriam R MR; Moura, Quézia Q; Landgraf, Mariza M; Lincopan, Nilton N

Publication Date: 2019-01

Variant appearance in text: 225: S80I

PubMed Link: 30687831

Variant Present in the following documents:

• Main text
• MRA.01471-18.pdf

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Draft genome sequence of a uropathogenic Escherichia coli isolate (ST38 O1:H15) from Pakistan, an emerging multidrug-resistant sequence type with a high virulence profile.

New Microbes And New Infections

Rafaque, Z Z; Dasti, J I JI; Andrews, S C SC

Publication Date: 2019-01

Variant appearance in text: 225: S80I

PubMed Link: 30510766

Variant Present in the following documents:

• Main text

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 239G>T

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

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Frequency, Antimicrobial Resistance and Genetic Diversity of Klebsiella pneumoniae in Food Samples.

Plos One

Guo, Yumei Y; Zhou, Haijian H; Qin, Liyun L; Pang, Zhizhao Z; Qin, Tian T; Ren, Hongyu H; Pan, Zhuo Z; Zhou, Jikun J

Publication Date: 2016

Variant appearance in text: 225: Ser80Ile

PubMed Link: 27078494

Variant Present in the following documents:

• Main text

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VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.

Nucleic Acids Research

Lai, Zhongwu Z; Markovets, Aleksandra A; Ahdesmaki, Miika M; Chapman, Brad B; Hofmann, Oliver O; McEwen, Robert R; Johnson, Justin J; Dougherty, Brian B; Barrett, J Carl JC; Dry, Jonathan R JR

Publication Date: 2016-06-20

Variant appearance in text: 225: 239G>T

PubMed Link: 27060149

Variant Present in the following documents:

• supp_gkw227_nar-03544-met-k-2015-File003.xls, sheet 2

View BVdb publication page

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