Publications:

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.

Nature Communications

Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA

Publication Date: 2023-04-03

Variant appearance in text: BRAF: K601N

PubMed Link: 37012232

Variant Present in the following documents:

• 41467_2023_37547_MOESM12_ESM.xlsx, sheet 2
• 41467_2023_37547_MOESM10_ESM.xlsx, sheet 3

View BVdb publication page

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Circulating Tumor DNA Monitoring Reveals Molecular Progression before Radiologic Progression in a Real-life Cohort of Patients with Advanced Non-small Cell Lung Cancer.

Cancer Research Communications

Frank, Malene S MS; Andersen, Christina S A CSA; Ahlborn, Lise B LB; Pallisgaard, Niels N; Bodtger, Uffe U; Gehl, Julie J

Publication Date: 2022-10

Variant appearance in text: BRAF: 1803A>C; K601N

PubMed Link: 36969747

Variant Present in the following documents:

• crc-22-0258-s08.xlsx, sheet 1

View BVdb publication page

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Whole-exome Sequencing of Nigerian Prostate Tumors from the Prostate Cancer Transatlantic Consortium (CaPTC) Reveals DNA Repair Genes Associated with African Ancestry.

Cancer Research Communications

White, Jason A JA; Kaninjing, Ernest T ET; Adeniji, Kayode A KA; Jibrin, Paul P; Obafunwa, John O JO; Ogo, Chidiebere N CN; Mohammed, Faruk F; Popoola, Ademola A; Fatiregun, Omolara A OA; Oluwole, Olabode P OP; Karanam, Balasubramanyam B; Elhussin, Isra I; Ambs, Stefan S; Tang, Wei W; Davis, Melissa M; Polak, Paz P; Campbell, Moray J MJ; Brignole, Kathryn R KR; Rotimi, Solomon O SO; Dean-Colomb, Windy W; Odedina, Folake T FT; Martin, Damali N DN; Yates, Clayton C

Publication Date: 2022-09

Variant appearance in text: BRAF: 1803A>C; Lys601Asn; rs121913365

PubMed Link: 36922933

Variant Present in the following documents:

• crc-22-0136-s01.xlsx, sheet 1
• crc-22-0136-s01.xlsx, sheet 3

View BVdb publication page

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Recapitulating thyroid cancer histotypes through engineering embryonic stem cells.

Nature Communications

Veschi, Veronica V; Turdo, Alice A; Modica, Chiara C; Verona, Francesco F; Di Franco, Simone S; Gaggianesi, Miriam M; Tirrò, Elena E; Di Bella, Sebastiano S; Iacono, Melania Lo ML; Pantina, Vincenzo Davide VD; Porcelli, Gaetana G; Mangiapane, Laura Rosa LR; Bianca, Paola P; Rizzo, Aroldo A; Sciacca, Elisabetta E; Pillitteri, Irene I; Vella, Veronica V; Belfiore, Antonino A; Bongiorno, Maria Rita MR; Pistone, Giuseppe G; Memeo, Lorenzo L; Colarossi, Lorenzo L; Giuffrida, Dario D; Colarossi, Cristina C; Vigneri, Paolo P; Todaro, Matilde M; Stassi, Giorgio G

Publication Date: 2023-03-11

Variant appearance in text: BRAF: K601N

PubMed Link: 36906579

Variant Present in the following documents:

• 41467_2023_36922_MOESM4_ESM.xls, sheet 2

View BVdb publication page

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Integrative pan-cancer genomic and transcriptomic analyses of refractory metastatic cancer.

Cancer Discovery

Pradat, Yoann Y; Viot, Julien J; Yurchenko, Andrey A AA; Gunbin, Konstantin K; Cerbone, Luigi L; Deloger, Marc M; Grisay, Guillaume G; Verlingue, Loic L; Scott, Veronique V; Padioleau, Ismael I; Panunzi, Leonardo L; Michiels, Stefan S; Hollebecque, Antoine A; Jules-Clement, Gerome G; Mezquita, Laura L; Laine, Antoine A; Loriot, Yohann Y; Besse, Benjamin B; Friboulet, Luc L; Andre, Fabrice F; Cournede, Paul-Henry PH; Gautheret, Daniel D; Nikolaev, Sergey I SI

Publication Date: 2023-03-02

Variant appearance in text: BRAF: K601N

PubMed Link: 36862804

Variant Present in the following documents:

• cd-22-0966_supplementary_tables_s1-s11_suppst1.xlsx, sheet 5

View BVdb publication page

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Network expansion of genetic associations defines a pleiotropy map of human cell biology.

Nature Genetics

Barrio-Hernandez, Inigo I; Schwartzentruber, Jeremy J; Shrivastava, Anjali A; Del-Toro, Noemi N; Gonzalez, Asier A; Zhang, Qian Q; Mountjoy, Edward E; Suveges, Daniel D; Ochoa, David D; Ghoussaini, Maya M; Bradley, Glyn G; Hermjakob, Henning H; Orchard, Sandra S; Dunham, Ian I; Anderson, Carl A CA; Porras, Pablo P; Beltrao, Pedro P

Publication Date: 2023-02-23

Variant appearance in text: BRAF: 1803A>C; Lys601Asn

PubMed Link: 36823319

Variant Present in the following documents:

• 41588_2023_1327_MOESM4_ESM.xlsx, sheet 6

View BVdb publication page

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Tumor-Type Agnostic, Targeted Therapies: BRAF Inhibitors Join the Group.

Acta Medica Academica

Vranic, Semir S; Basu, Gargi D GD; Hall, David W DW; Gatalica, Zoran Z

Publication Date: 2022-12-30

Variant appearance in text: BRAF: K601N

PubMed Link: 36799315

Variant Present in the following documents:

• AMA-51-217.pdf

View BVdb publication page

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Integrative proteomic characterization of adenocarcinoma of esophagogastric junction.

Nature Communications

Li, Shengli S; Yuan, Li L; Xu, Zhi-Yuan ZY; Xu, Jing-Li JL; Chen, Gui-Ping GP; Guan, Xiaoqing X; Pan, Guang-Zhao GZ; Hu, Can C; Dong, Jinyun J; Du, Yi-An YA; Yang, Li-Tao LT; Ni, Mao-Wei MW; Jiang, Rui-Bin RB; Zhu, Xiu X; Lv, Hang H; Xu, Han-Dong HD; Zhang, Sheng-Jie SJ; Qin, Jiang-Jiang JJ; Cheng, Xiang-Dong XD

Publication Date: 2023-02-11

Variant appearance in text: BRAF: 1803A>C; Lys601Asn; rs121913365

PubMed Link: 36774361

Variant Present in the following documents:

• 41467_2023_36462_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines.

Frontiers In Oncology

Giliberto, Mariaserena M; Santana, Leonardo Miranda LM; Holien, Toril T; Misund, Kristine K; Nakken, Sigve S; Vodak, Daniel D; Hovig, Eivind E; Meza-Zepeda, Leonardo A LA; Coward, Eivind E; Waage, Anders A; Taskén, Kjetil K; Skånland, Sigrid S SS

Publication Date: 2022

Variant appearance in text: BRAF: K601N

PubMed Link: 36523963

Variant Present in the following documents:

• Main text
• fonc-12-1040730.pdf

View BVdb publication page

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New Directions in the Therapy of Glioblastoma.

Cancers

Szklener, Katarzyna K; Mazurek, Marek M; Wieteska, Małgorzata M; Wacławska, Monika M; Bilski, Mateusz M; Mańdziuk, Sławomir S

Publication Date: 2022-10-31

Variant appearance in text: BRAF: K601N

PubMed Link: 36358795

Variant Present in the following documents:

• Main text
• cancers-14-05377.pdf

View BVdb publication page

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Clinical associations and genetic interactions of oncogenic BRAF alleles.

Peerj

Wagner, Sebastian A SA

Publication Date: 2022

Variant appearance in text: BRAF: K601N

PubMed Link: 36275468

Variant Present in the following documents:

• peerj-10-14126.pdf

View BVdb publication page

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Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma.

Experimental Hematology & Oncology

Li, Shan-Shan SS; Zhai, Xiao-Hui XH; Liu, Hai-Ling HL; Liu, Ting-Zhi TZ; Cao, Tai-Yuan TY; Chen, Dong-Mei DM; Xiao, Le-Xin LX; Gan, Xiao-Qin XQ; Cheng, Ke K; Hong, Wan-Jia WJ; Huang, Yan Y; Lian, Yi-Fan YF; Xiao, Jian J

Publication Date: 2022-10-15

Variant appearance in text: BRAF: 1803A>C; Lys601Asn; rs121913365

PubMed Link: 36243813

Variant Present in the following documents:

• 40164_2022_325_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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The mutational landscape of cancer's vulnerability to ionizing radiation.

Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research

Gopal, Priyanka P; Yard, Brian D BD; Petty, Aaron A; Lal, Jessica C JC; Bera, Titas K TK; Hoang, Trung Q TQ; Buhimschi, Alexandru B AB; Abazeed, Mohamed E ME

Publication Date: 2022-10-12

Variant appearance in text: BRAF: K601N

PubMed Link: 36222846

Variant Present in the following documents:

• ccr-22-1914_supplementary_data_2_suppds2.xlsx, sheet 1
• ccr-22-1914_supplementary_data_3_suppds3.xlsx, sheet 1

View BVdb publication page

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Case report: Spindle cell neoplasm presenting as a spontaneous intestinal perforation in a term infant.

Frontiers In Pediatrics

Callaghan, Lauren T LT; Lafreniere, Anthea A; Onwuka, Ekene A EA; Beckman, Ross M RM; Foster, Jennifer H JH; Quintanilla, Norma N; Guillory, Charleta C; Lee, Timothy C TC; Cheng, Lily S LS

Publication Date: 2022

Variant appearance in text: BRAF: K601N

PubMed Link: 36090580

Variant Present in the following documents:

• Main text
• fped-10-952023.pdf

View BVdb publication page

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Genomic Landscape of RTK/RAS Pathway and Tumor Immune Infiltration as Prognostic Indicator of Lung Adenocarcinoma.

Frontiers In Oncology

Yin, Xiang-Qian XQ; Yin, Xue-Hui XH; Yu, Ya-Qin YQ; Xu, Lang L; Zhang, Mao M

Publication Date: 2022

Variant appearance in text: BRAF: 1803A>C; K601N

PubMed Link: 35936718

Variant Present in the following documents:

• Table_4.xlsx, sheet 2

View BVdb publication page

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A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma.

Frontiers In Immunology

Wang, Xiaoxuan X; Lu, Yaxiao Y; Liu, Ziyi Z; Zhang, Yidan Y; He, You Y; Sun, Cong C; Li, Lanfang L; Zhai, Qiongli Q; Meng, Bin B; Ren, Xiubao X; Wu, Xudong X; Zhang, Huilai H; Wang, Xianhuo X

Publication Date: 2022

Variant appearance in text: BRAF: 1803A>C; K601N

PubMed Link: 35874768

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 2

View BVdb publication page

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Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis.

Nature Genetics

Kar, Siddhartha P SP; Quiros, Pedro M PM; Gu, Muxin M; Jiang, Tao T; Mitchell, Jonathan J; Langdon, Ryan R; Iyer, Vivek V; Barcena, Clea C; Vijayabaskar, M S MS; Fabre, Margarete A MA; Carter, Paul P; Petrovski, Slavé S; Burgess, Stephen S; Vassiliou, George S GS

Publication Date: 2022-08

Variant appearance in text: N/A

PubMed Link: 35835912

Variant Present in the following documents:

View BVdb publication page

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Clinical genomic profiling in the management of patients with soft tissue and bone sarcoma.

Nature Communications

Gounder, Mrinal M MM; Agaram, Narasimhan P NP; Trabucco, Sally E SE; Robinson, Victoria V; Ferraro, Richard A RA; Millis, Sherri Z SZ; Krishnan, Anita A; Lee, Jessica J; Attia, Steven S; Abida, Wassim W; Drilon, Alexander A; Chi, Ping P; Angelo, Sandra P D' SP; Dickson, Mark A MA; Keohan, Mary Lou ML; Kelly, Ciara M CM; Agulnik, Mark M; Chawla, Sant P SP; Choy, Edwin E; Chugh, Rashmi R; Meyer, Christian F CF; Myer, Parvathi A PA; Moore, Jessica L JL; Okimoto, Ross A RA; Pollock, Raphael E RE; Ravi, Vinod V; Singh, Arun S AS; Somaiah, Neeta N; Wagner, Andrew J AJ; Healey, John H JH; Frampton, Garrett M GM; Venstrom, Jeffrey M JM; Ross, Jeffrey S JS; Ladanyi, Marc M; Singer, Samuel S; Brennan, Murray F MF; Schwartz, Gary K GK; Lazar, Alexander J AJ; Thomas, David M DM; Maki, Robert G RG; Tap, William D WD; Ali, Siraj M SM; Jin, Dexter X DX

Publication Date: 2022-06-15

Variant appearance in text: BRAF: K601N

PubMed Link: 35705558

Variant Present in the following documents:

• 41467_2022_30496_MOESM2_ESM.xls, sheet 1

View BVdb publication page

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Genomic characterization of lymphomas in patients with inborn errors of immunity.

Blood Advances

Ye, Xiaofei X; Maglione, Paul J PJ; Wehr, Claudia C; Li, Xiaobo X; Wang, Yating Y; Abolhassani, Hassan H; Deripapa, Elena E; Liu, Dongbing D; Borte, Stephan S; Du, Likun L; Wan, Hui H; Plötner, Andreas A; Giannoula, Yvonne Y; Ko, Huai-Bin HB; Hou, Yong Y; Zhu, Shida S; Grossman, Jennifer K JK; Sander, Birgitta B; Grimbacher, Bodo B; Hammarström, Lennart L; Fedorova, Alina A; Rosenzweig, Sergio D SD; Shcherbina, Anna A; Wu, Kui K; Warnatz, Klaus K; Cunningham-Rundles, Charlotte C; Pan-Hammarström, Qiang Q

Publication Date: 2022-09-27

Variant appearance in text: N/A

PubMed Link: 35687490

Variant Present in the following documents:

View BVdb publication page

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Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes.

Genome Medicine

Goel, Anshita A; Ward, Douglas G DG; Noyvert, Boris B; Yu, Minghao M; Gordon, Naheema S NS; Abbotts, Ben B; Colbourne, John K JK; Kissane, Stephen S; James, Nicholas D ND; Zeegers, Maurice P MP; Cheng, Kar Keung KK; Cazier, Jean-Baptiste JB; Whalley, Celina M CM; Beggs, Andrew D AD; Palles, Claire C; Arnold, Roland R; Bryan, Richard T RT

Publication Date: 2022-06-03

Variant appearance in text: BRAF: 1803A>C; Lys601Asn; rs121913365

PubMed Link: 35655252

Variant Present in the following documents:

• 13073_2022_1056_MOESM1_ESM.xlsx, sheet 3

View BVdb publication page

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Results of screening in early and advanced thoracic malignancies in the EORTC pan-European SPECTAlung platform.

Scientific Reports

Morfouace, M M; Novello, S S; Stevovic, A A; Dooms, C C; Janžič, U U; Berghmans, T T; Dziadziuszko, R R; Gorlia, T T; Felip, E E; Paz-Ares, L L; Mazieres, J J; O'Brien, M M; Bironzo, P P; Vansteenkiste, J J; Lacroix, L L; Dingemans, A C AC; Golfinopoulos, V V; Besse, B B

Publication Date: 2022-05-18

Variant appearance in text: BRAF: K601N

PubMed Link: 35585228

Variant Present in the following documents:

• Main text
• 41598_2022_Article_12056.pdf

View BVdb publication page

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Author Correction: Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis.

Nature Communications

Farshidfar, Farshad F; Rhrissorrakrai, Kahn K; Levovitz, Chaya C; Peng, Cong C; Knight, James J; Bacchiocchi, Antonella A; Su, Juan J; Yin, Mingzhu M; Sznol, Mario M; Ariyan, Stephan S; Clune, James J; Olino, Kelly K; Parida, Laxmi L; Nikolaus, Joerg J; Zhang, Meiling M; Zhao, Shuang S; Wang, Yan Y; Huang, Gang G; Wan, Miaojian M; Li, Xianan X; Cao, Jian J; Yan, Qin Q; Chen, Xiang X; Newman, Aaron M AM; Halaban, Ruth R

Publication Date: 2022-05-10

Variant appearance in text: BRAF: K601N

PubMed Link: 35538087

Variant Present in the following documents:

• 41467_2022_30446_MOESM1_ESM.xlsx, sheet 3

View BVdb publication page

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Identification of FDA-approved bifonazole as a SARS-CoV-2 blocking agent following a bioreporter drug screen.

Molecular Therapy : The Journal Of The American Society Of Gene Therapy

Taha, Zaid Z; Arulanandam, Rozanne R; Maznyi, Glib G; Godbout, Elena E; Carter-Timofte, Madalina E ME; Kurmasheva, Naziia N; Reinert, Line S LS; Chen, Andrew A; Crupi, Mathieu J F MJF; Boulton, Stephen S; Laroche, Geneviève G; Phan, Alexandra A; Rezaei, Reza R; Alluqmani, Nouf N; Jirovec, Anna A; Acal, Alexandra A; Brown, Emily E F EEF; Singaravelu, Ragunath R; Petryk, Julia J; Idorn, Manja M; Potts, Kyle G KG; Todesco, Hayley H; John, Cini C; Mahoney, Douglas J DJ; Ilkow, Carolina S CS; Giguère, Patrick P; Alain, Tommy T; Côté, Marceline M; Paludan, Søren R SR; Olagnier, David D; Bell, John C JC; Azad, Taha T; Diallo, Jean-Simon JS

Publication Date: 2022-09-07

Variant appearance in text: BRAF: K601N

PubMed Link: 35526097

Variant Present in the following documents:

• mmc2.pdf
• main.pdf

View BVdb publication page

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PIM1 genetic alterations associated with distinct molecular profiles, phenotypes and drug responses in diffuse large B-cell lymphoma.

Clinical And Translational Medicine

Zhang, Huilai H; Lu, Yaxiao Y; Zhang, Tingting T; Guan, Qingpei Q; Wang, Xiaoxuan X; Guo, Yixian Y; Li, Lanfang L; Qiu, Lihua L; Qian, Zhengzi Z; Zhou, Shiyong S; Gong, Wenchen W; Meng, Bin B; Ren, Xiubao X; Wang, Xianhuo X

Publication Date: 2022-04

Variant appearance in text: BRAF: K601N

PubMed Link: 35415904

Variant Present in the following documents:

• CTM2-12-e808-s003.xlsx, sheet 2

View BVdb publication page

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Monitoring of Leukemia Clones in B-cell Acute Lymphoblastic Leukemia at Diagnosis and During Treatment by Single-cell DNA Amplicon Sequencing.

Hemasphere

Meyers, Sarah S; Alberti-Servera, Llucia L; Gielen, Olga O; Erard, Margot M; Swings, Toon T; De Bie, Jolien J; Michaux, Lucienne L; Dewaele, Barbara B; Boeckx, Nancy N; Uyttebroeck, Anne A; De Keersmaecker, Kim K; Maertens, Johan J; Segers, Heidi H; Cools, Jan J; Demeyer, Sofie S

Publication Date: 2022-04

Variant appearance in text: BRAF: 1803A>C; K601N; rs121913365

PubMed Link: 35291210

Variant Present in the following documents:

• Main text
• hs9-6-e700-s004.xlsx, sheet 9

View BVdb publication page

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Clinical and genomic features of Chinese lung cancer patients with germline mutations.

Nature Communications

Peng, Wenying W; Li, Bin B; Li, Jin J; Chang, Lianpeng L; Bai, Jing J; Yi, Yuting Y; Chen, Rongrong R; Zhang, Yanyan Y; Chen, Chen C; Pu, Xingxiang X; Jiang, Meilin M; Li, Jia J; Zhong, Rui R; Xu, Fang F; Chen, Bolin B; Xu, Li L; Wang, Ning N; Huan, Jiaojiao J; Dai, Pingping P; Guan, Yanfang Y; Yang, Ling L; Xia, Xuefeng X; Yi, Xin X; Wang, Jiayin J; Yu, Fenglei F; Wu, Lin L

Publication Date: 2022-03-10

Variant appearance in text: BRAF: 1803A>C; K601N

PubMed Link: 35273153

Variant Present in the following documents:

• 41467_2022_28840_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis.

Nature Communications

Farshidfar, Farshad F; Rhrissorrakrai, Kahn K; Levovitz, Chaya C; Peng, Cong C; Knight, James J; Bacchiocchi, Antonella A; Su, Juan J; Yin, Mingzhu M; Sznol, Mario M; Ariyan, Stephan S; Clune, James J; Olino, Kelly K; Parida, Laxmi L; Nikolaus, Joerg J; Zhang, Meiling M; Zhao, Shuang S; Wang, Yan Y; Huang, Gang G; Wan, Miaojian M; Li, Xianan X; Cao, Jian J; Yan, Qin Q; Chen, Xiang X; Newman, Aaron M AM; Halaban, Ruth R

Publication Date: 2022-02-23

Variant appearance in text: BRAF: K601N

PubMed Link: 35197475

Variant Present in the following documents:

• 41467_2022_28566_MOESM5_ESM.xlsx, sheet 3

View BVdb publication page

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KRAS and RAS-MAPK Pathway Deregulation in Mature B Cell Lymphoproliferative Disorders.

Cancers

Vendramini, Elena E; Bomben, Riccardo R; Pozzo, Federico F; Bittolo, Tamara T; Tissino, Erika E; Gattei, Valter V; Zucchetto, Antonella A

Publication Date: 2022-01-28

Variant appearance in text: BRAF: K601N

PubMed Link: 35158933

Variant Present in the following documents:

• Main text
• cancers-14-00666.pdf

View BVdb publication page

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KRAS and RAS-MAPK Pathway Deregulation in Mature B Cell Lymphoproliferative Disorders.

Cancers

Vendramini, Elena E; Bomben, Riccardo R; Pozzo, Federico F; Bittolo, Tamara T; Tissino, Erika E; Gattei, Valter V; Zucchetto, Antonella A

Publication Date: 2022-01-28

Variant appearance in text: BRAF: K601N

PubMed Link: 35158933

Variant Present in the following documents:

• Main text
• cancers-14-00666.pdf

View BVdb publication page

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Combined MEK/MDM2 inhibition demonstrates antitumor efficacy in TP53 wild-type thyroid and colorectal cancers with MAPK alterations.

Scientific Reports

Pairawan, Seyed S; Akcakanat, Argun A; Kopetz, Scott S; Tapia, Coya C; Zheng, Xiaofeng X; Chen, Huiqin H; Ha, Min Jin MJ; Rizvi, Yasmeen Y; Holla, Vijaykumar V; Wang, Jing J; Evans, Kurt W KW; Zhao, Ming M; Busaidy, Naifa N; Fang, Bingliang B; Roth, Jack A JA; Dumbrava, Ecaterina Ileana EI; Meric-Bernstam, Funda F

Publication Date: 2022-01-24

Variant appearance in text: BRAF: K601N

PubMed Link: 35075200

Variant Present in the following documents:

• Main text

View BVdb publication page

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Combined MEK/MDM2 inhibition demonstrates antitumor efficacy in TP53 wild-type thyroid and colorectal cancers with MAPK alterations.

Scientific Reports

Pairawan, Seyed S; Akcakanat, Argun A; Kopetz, Scott S; Tapia, Coya C; Zheng, Xiaofeng X; Chen, Huiqin H; Ha, Min Jin MJ; Rizvi, Yasmeen Y; Holla, Vijaykumar V; Wang, Jing J; Evans, Kurt W KW; Zhao, Ming M; Busaidy, Naifa N; Fang, Bingliang B; Roth, Jack A JA; Dumbrava, Ecaterina Ileana EI; Meric-Bernstam, Funda F

Publication Date: 2022-01-24

Variant appearance in text: BRAF: K601N

PubMed Link: 35075200

Variant Present in the following documents:

• Main text

View BVdb publication page

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Acetylation-dependent regulation of BRAF oncogenic function.

Cell Reports

Dai, Xiangpeng X; Zhang, Xiaoling X; Yin, Qing Q; Hu, Jia J; Guo, Jianping J; Gao, Yang Y; Snell, Aidan H AH; Inuzuka, Hiroyuki H; Wan, Lixin L; Wei, Wenyi W

Publication Date: 2022-01-18

Variant appearance in text: BRAF: K601N

PubMed Link: 35045286

Variant Present in the following documents:

• Main text

View BVdb publication page

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Acetylation-dependent regulation of BRAF oncogenic function.

Cell Reports

Dai, Xiangpeng X; Zhang, Xiaoling X; Yin, Qing Q; Hu, Jia J; Guo, Jianping J; Gao, Yang Y; Snell, Aidan H AH; Inuzuka, Hiroyuki H; Wan, Lixin L; Wei, Wenyi W

Publication Date: 2022-01-18

Variant appearance in text: BRAF: K601N

PubMed Link: 35045286

Variant Present in the following documents:

• Main text

View BVdb publication page

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Molecular characterization of Kita-Kyushu lung cancer antigen (KK-LC-1) expressing carcinomas.

Oncotarget

Hsu, Robert R; Baca, Yasmine Y; Xiu, Joanne J; Wang, Rongfu R; Bodor, J Nicholas JN; Kim, Chul C; Khan, Hina H; Mamdani, Hirva H; Nagasaka, Misako M; Puri, Sonam S; Liu, Stephen V SV; Korn, W Michael WM; Nieva, Jorge J JJ

Publication Date: 2021-12-07

Variant appearance in text: BRAF: K601N

PubMed Link: 34917263

Variant Present in the following documents:

• oncotarget-12-2449-s001.pdf

View BVdb publication page

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BRAF Signaling Inhibition in Glioblastoma: Which Clinical Perspectives?

Frontiers In Oncology

Bouchè, Victoria V; Aldegheri, Giovanni G; Donofrio, Carmine Antonio CA; Fioravanti, Antonio A; Roberts-Thomson, Samuel S; Fox, Stephen B SB; Schettini, Francesco F; Generali, Daniele D

Publication Date: 2021

Variant appearance in text: BRAF: K601N

PubMed Link: 34804975

Variant Present in the following documents:

• Main text
• fonc-11-772052.pdf

View BVdb publication page

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Immunohistochemistry as an accurate tool for the assessment of BRAF V600E and TP53 mutations in primary and metastatic melanoma.

Molecular And Clinical Oncology

Rusu, Stefan S; Verocq, Camille C; Trepant, Anne Laure AL; Maris, Calliope C; De Nève, Nancy N; Blanchard, Oriane O; Van Campenhout, Claude C; De Clercq, Sarah S; Rorive, Sandrine S; Cotoi, Ovidiu Simion OS; Decaestecker, Christine C; Salmon, Isabelle I; D'Haene, Nicky N

Publication Date: 2021-12

Variant appearance in text: BRAF: K601N

PubMed Link: 34790354

Variant Present in the following documents:

• Main text

View BVdb publication page

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Grade 4 Neutropenia Secondary to Immune Checkpoint Inhibition - A Descriptive Observational Retrospective Multicenter Analysis.

Frontiers In Oncology

Zaremba, Anne A; Kramer, Rafaela R; De Temple, Viola V; Bertram, Stefanie S; Salzmann, Martin M; Gesierich, Anja A; Reinhardt, Lydia L; Baroudjian, Barouyr B; Sachse, Michael M MM; Mechtersheimer, Gunhild G; Johnson, Douglas B DB; Weppler, Alison M AM; Spain, Lavinia L; Loquai, Carmen C; Dudda, Milena M; Pföhler, Claudia C; Hepner, Adriana A; Long, Georgina V GV; Menzies, Alexander M AM; Carlino, Matteo S MS; Lebbé, Céleste C; Enokida, Tomohiro T; Tahara, Makoto M; Bröckelmann, Paul J PJ; Eigentler, Thomas T; Kähler, Katharina C KC; Gutzmer, Ralf R; Berking, Carola C; Ugurel, Selma S; Stadtler, Nadine N; Sucker, Antje A; Becker, Jürgen C JC; Livingstone, Elisabeth E; Meier, Friedegund F; Hassel, Jessica C JC; Schadendorf, Dirk D; Hanoun, Maher M; Heinzerling, Lucie L; Zimmer, Lisa L

Publication Date: 2021

Variant appearance in text: BRAF: K601N

PubMed Link: 34746007

Variant Present in the following documents:

• Main text
• fonc-11-765608.pdf

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RAC1 Alterations Induce Acquired Dabrafenib Resistance in Association with Anaplastic Transformation in a Papillary Thyroid Cancer Patient.

Cancers

Bagheri-Yarmand, Rozita R; Busaidy, Naifa L NL; McBeath, Elena E; Danysh, Brian P BP; Evans, Kurt W KW; Moss, Tyler J TJ; Akcakanat, Argun A; Ng, Patrick K S PKS; Knippler, Christina M CM; Golden, Jalyn A JA; Williams, Michelle D MD; Multani, Asha S AS; Cabanillas, Maria E ME; Shaw, Kenna R KR; Meric-Bernstam, Funda F; Shah, Manisha H MH; Ringel, Matthew D MD; Hofmann, Marie Claude MC

Publication Date: 2021-09-30

Variant appearance in text: BRAF: K601N

PubMed Link: 34638434

Variant Present in the following documents:

• Main text
• cancers-13-04950.pdf

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Targeted Therapy of Papillary Thyroid Cancer: A Comprehensive Genomic Analysis.

Frontiers In Endocrinology

Hescheler, Daniel A DA; Riemann, Burkhard B; Hartmann, Milan J M MJM; Michel, Maximilian M; Faust, Michael M; Bruns, Christiane J CJ; Alakus, Hakan H; Chiapponi, Costanza C

Publication Date: 2021

Variant appearance in text: BRAF: K601N

PubMed Link: 34630336

Variant Present in the following documents:

• Table_1.xlsx, sheet 2

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BRAF mutation correlates with worse local-regional control following radiation therapy in patients with stage III melanoma.

Radiation Oncology (London, England)

Wolfe, Adam R AR; Chablani, Priyanka P; Siedow, Michael R MR; Miller, Eric D ED; Walston, Steve S; Kendra, Kari L KL; Wuthrick, Evan E; Williams, Terence M TM

Publication Date: 2021-09-18

Variant appearance in text: BRAF: K601N

PubMed Link: 34537078

Variant Present in the following documents:

• Main text

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Retrospective Case Series Analysis of RAF Family Alterations in Pancreatic Cancer: Real-World Outcomes From Targeted and Standard Therapies.

Jco Precision Oncology

Hendifar, Andrew A; Blais, Edik M EM; Wolpin, Brian B; Subbiah, Vivek V; Collisson, Eric E; Singh, Isha I; Cannon, Timothy T; Shaw, Kenna K; Petricoin, Emanuel F EF; Klempner, Samuel S; Lyons, Emily E; Wang-Gillam, Andrea A; Pishvaian, Michael J MJ; O'Reilly, Eileen M EM

Publication Date: 2021

Variant appearance in text: BRAF: K601N

PubMed Link: 34476331

Variant Present in the following documents:

• po-5-po.20.00494.pdf

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Actionability evaluation of biliary tract cancer by genome transcriptome analysis and Asian cancer knowledgebase.

Oncotarget

Okawa, Yuki Y; Ebata, Nobutaka N; Kim, Nayoung K D NKD; Fujita, Masashi M; Maejima, Kazuhiro K; Sasagawa, Shota S; Nakamura, Toru T; Park, Woong-Yang WY; Hirano, Satoshi S; Nakagawa, Hidewaki H

Publication Date: 2021-07-20

Variant appearance in text: BRAF: Lys601Asn

PubMed Link: 34316332

Variant Present in the following documents:

• oncotarget-12-1540-s001.pdf

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Composite pheochromocytoma/paraganglioma-ganglioneuroma: analysis of SDH and ATRX status, and identification of frequent HRAS and BRAF mutations.

Endocrine Connections

Chen, Jingci J; Wu, Yan Y; Wang, Pengyan P; Wu, Huanwen H; Tong, Anli A; Chang, Xiaoyan X

Publication Date: 2021-08-11

Variant appearance in text: BRAF: K601N

PubMed Link: 34261040

Variant Present in the following documents:

• Main text
• EC-21-0300.pdf

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Genomic Landscape of Head and Neck Squamous Cell Carcinoma Across Different Anatomic Sites in Chinese Population.

Frontiers In Genetics

Ju, Yunhe Y; Wu, Xingrao X; Wang, Huizhen H; Li, Bin B; Long, Qing Q; Zhang, Dadong D; Chen, Hao H; Xiao, Nianqing N; Li, Fugen F; Zhang, Shiwen S; Yang, Shenggang S

Publication Date: 2021

Variant appearance in text: BRAF: K601N

PubMed Link: 34194478

Variant Present in the following documents:

• Data_Sheet_1.xlsx, sheet 6

View BVdb publication page

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Early plasma circulating tumor DNA (ctDNA) changes predict response to first-line pembrolizumab-based therapy in non-small cell lung cancer (NSCLC).

Journal For Immunotherapy Of Cancer

Ricciuti, Biagio B; Jones, Greg G; Severgnini, Mariano M; Alessi, Joao V JV; Recondo, Gonzalo G; Lawrence, Marissa M; Forshew, Tim T; Lydon, Christine C; Nishino, Mizuki M; Cheng, Michael M; Awad, Mark M

Publication Date: 2021-03

Variant appearance in text: BRAF: K601N

PubMed Link: 33771889

Variant Present in the following documents:

• jitc-2020-001504supp002.pdf

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Comprehensive analysis of mutational and clinicopathologic characteristics of poorly differentiated colorectal neuroendocrine carcinomas.

Scientific Reports

Lee, Sun Mi SM; Sung, Chang Ohk CO

Publication Date: 2021-03-18

Variant appearance in text: BRAF: K601N

PubMed Link: 33737597

Variant Present in the following documents:

• Main text
• 41598_2021_Article_85593.pdf

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Mutation profile and immunoscore signature in thymic carcinomas: An exploratory study and review of the literature.

Thoracic Cancer

Asselta, Rosanna R; Di Tommaso, Luca L; Perrino, Matteo M; Destro, Annarita A; Giordano, Laura L; Cardamone, Giulia G; Rubino, Luca L; Santoro, Armando A; Duga, Stefano S; Zucali, Paolo Andrea PA

Publication Date: 2021-05

Variant appearance in text: BRAF: 1803A>C; K601N

PubMed Link: 33704917

Variant Present in the following documents:

• TCA-12-1271-s003.xls, sheet 1

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Pancreatic ductal adenocarcinoma in the era of precision medicine.

Seminars In Oncology

Zheng-Lin, Binbin B; O'Reilly, Eileen M EM

Publication Date: 2021-02

Variant appearance in text: BRAF: K601N

PubMed Link: 33637355

Variant Present in the following documents:

• Main text

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Clinically significant genomic alterations in the Chinese and Western patients with intrahepatic cholangiocarcinoma.

Bmc Cancer

Xu, Shifeng S; Guo, Yuan Y; Zeng, Yanwu Y; Song, Zhijian Z; Zhu, Xiaodan X; Fan, Ning N; Zhang, Zhilei Z; Ren, Guibing G; Zang, Yunjin Y; Rao, Wei W

Publication Date: 2021-02-12

Variant appearance in text: BRAF: K601N

PubMed Link: 33579226

Variant Present in the following documents:

• Main text
• 12885_2021_Article_7792.pdf

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Assessment of RAS Dependency for BRAF Alterations Using Cancer Genomic Databases.

Jama Network Open

Zhao, Yiqing Y; Yu, Hanzhong H; Ida, Cris M CM; Halling, Kevin C KC; Kipp, Benjamin R BR; Geiersbach, Katherine K; Rumilla, Kandelaria M KM; Gupta, Sounak S; Lin, Ming-Tseh MT; Zheng, Gang G

Publication Date: 2021-01-04

Variant appearance in text: BRAF: K601N

PubMed Link: 33507258

Variant Present in the following documents:

• Main text
• jamanetwopen-e2035479-s001.pdf

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Effectiveness of Molecular Testing Techniques for Diagnosis of Indeterminate Thyroid Nodules: A Randomized Clinical Trial.

Jama Oncology

Livhits, Masha J MJ; Zhu, Catherine Y CY; Kuo, Eric J EJ; Nguyen, Dalena T DT; Kim, Jiyoon J; Tseng, Chi-Hong CH; Leung, Angela M AM; Rao, Jianyu J; Levin, Mary M; Douek, Michael L ML; Beckett, Katrina R KR; Cheung, Dianne S DS; Gofnung, Yaroslav A YA; Smooke-Praw, Stephanie S; Yeh, Michael W MW

Publication Date: 2021-01-01

Variant appearance in text: BRAF: K601N

PubMed Link: 33300952

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genomic characterization of HIV-associated plasmablastic lymphoma identifies pervasive mutations in the JAK-STAT pathway.

Blood Cancer Discovery

Liu, Zhaoqi Z; Filip, Ioan I; Gomez, Karen K; Engelbrecht, Dewaldt D; Meer, Shabnum S; Lalloo, Pooja N PN; Patel, Pareen P; Perner, Yvonne Y; Zhao, Junfei J; Wang, Jiguang J; Pasqualucci, Laura L; Rabadan, Raul R; Willem, Pascale P

Publication Date: 2020-07

Variant appearance in text: BRAF: K601N

PubMed Link: 33225311

Variant Present in the following documents:

• Main text

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Emerging BRAF Mutations in Cancer Progression and Their Possible Effects on Transcriptional Networks.

Genes

Śmiech, Magdalena M; Leszczyński, Paweł P; Kono, Hidetoshi H; Wardell, Christopher C; Taniguchi, Hiroaki H

Publication Date: 2020-11-12

Variant appearance in text: BRAF: K601N

PubMed Link: 33198372

Variant Present in the following documents:

• Main text
• genes-11-01342.pdf

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Inherited causes of clonal haematopoiesis in 97,691 whole genomes.

Nature

Bick, Alexander G AG; Weinstock, Joshua S JS; Nandakumar, Satish K SK; Fulco, Charles P CP; Bao, Erik L EL; Zekavat, Seyedeh M SM; Szeto, Mindy D MD; Liao, Xiaotian X; Leventhal, Matthew J MJ; Nasser, Joseph J; Chang, Kyle K; Laurie, Cecelia C; Burugula, Bala Bharathi BB; Gibson, Christopher J CJ; Lin, Amy E AE; Taub, Margaret A MA; Aguet, Francois F; Ardlie, Kristin K; Mitchell, Braxton D BD; Barnes, Kathleen C KC; Moscati, Arden A; Fornage, Myriam M; Redline, Susan S; Psaty, Bruce M BM; Silverman, Edwin K EK; Weiss, Scott T ST; Palmer, Nicholette D ND; Vasan, Ramachandran S RS; Burchard, Esteban G EG; Kardia, Sharon L R SLR; He, Jiang J; Kaplan, Robert C RC; Smith, Nicholas L NL; Arnett, Donna K DK; Schwartz, David A DA; Correa, Adolfo A; de Andrade, Mariza M; Guo, Xiuqing X; Konkle, Barbara A BA; Custer, Brian B; Peralta, Juan M JM; Gui, Hongsheng H; Meyers, Deborah A DA; McGarvey, Stephen T ST; Chen, Ida Yii-Der IY; Shoemaker, M Benjamin MB; Peyser, Patricia A PA; Broome, Jai G JG; Gogarten, Stephanie M SM; Wang, Fei Fei FF; Wong, Quenna Q; Montasser, May E ME; Daya, Michelle M; Kenny, Eimear E EE; North, Kari E KE; Launer, Lenore J LJ; Cade, Brian E BE; Bis, Joshua C JC; Cho, Michael H MH; Lasky-Su, Jessica J; Bowden, Donald W DW; Cupples, L Adrienne LA; Mak, Angel C Y ACY; Becker, Lewis C LC; Smith, Jennifer A JA; Kelly, Tanika N TN; Aslibekyan, Stella S; Heckbert, Susan R SR; Tiwari, Hemant K HK; Yang, Ivana V IV; Heit, John A JA; Lubitz, Steven A SA; Johnsen, Jill M JM; Curran, Joanne E JE; Wenzel, Sally E SE; Weeks, Daniel E DE; Rao, Dabeeru C DC; Darbar, Dawood D; Moon, Jee-Young JY; Tracy, Russell P RP; Buth, Erin J EJ; Rafaels, Nicholas N; Loos, Ruth J F RJF; Durda, Peter P; Liu, Yongmei Y; Hou, Lifang L; Lee, Jiwon J; Kachroo, Priyadarshini P; Freedman, Barry I BI; Levy, Daniel D; Bielak, Lawrence F LF; Hixson, James E JE; Floyd, James S JS; Whitsel, Eric A EA; Ellinor, Patrick T PT; Irvin, Marguerite R MR; Fingerlin, Tasha E TE; Raffield, Laura M LM; Armasu, Sebastian M SM; Wheeler, Marsha M MM; Sabino, Ester C EC; Blangero, John J; Williams, L Keoki LK; Levy, Bruce D BD; Sheu, Wayne Huey-Herng WH; Roden, Dan M DM; Boerwinkle, Eric E; Manson, JoAnn E JE; Mathias, Rasika A RA; Desai, Pinkal P; Taylor, Kent D KD; Johnson, Andrew D AD; , ; Auer, Paul L PL; Kooperberg, Charles C; Laurie, Cathy C CC; Blackwell, Thomas W TW; Smith, Albert V AV; Zhao, Hongyu H; Lange, Ethan E; Lange, Leslie L; Rich, Stephen S SS; Rotter, Jerome I JI; Wilson, James G JG; Scheet, Paul P; Kitzman, Jacob O JO; Lander, Eric S ES; Engreitz, Jesse M JM; Ebert, Benjamin L BL; Reiner, Alexander P AP; Jaiswal, Siddhartha S; Abecasis, Gonçalo G; Sankaran, Vijay G VG; Kathiresan, Sekar S; Natarajan, Pradeep P

Publication Date: 2020-10

Variant appearance in text: N/A

PubMed Link: 33057201

Variant Present in the following documents:

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